Co-expression analysis

Gene ID	PtpAffx.28701.2.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g01520: zinc finger (C3HC4-type RING finger) family protein (HF=1e-13)
Module size	8 genes
NF	0.61
%ile	90.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	83.9	0.95	PtpAffx.28701.2.S1_s_at	BU867887	hypothetical protein	-	1e-13	At5g01520	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	0.96	PtpAffx.987.3.S1_at	CA825970	hypothetical protein	-	3e-2	At1g33840	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	0.97	PtpAffx.65180.2.A1_at	CK091548	AP2/ERF domain-containing transcription factor	-	5e-26	At5g50080	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.97	PtpAffx.4042.1.S1_at	CV241460	hypothetical protein	-	1e-1	At3g62550	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.97	Ptp.7112.1.S1_s_at	CX181950	hypothetical protein	-	2e+0	At5g09980	PROPEP4 (Elicitor peptide 4 precursor)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.98	Ptp.7112.1.S1_at	CX181950	hypothetical protein	-	2e+0	At5g09980	PROPEP4 (Elicitor peptide 4 precursor)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	Ptp.7698.1.S1_at	DN488864	hypothetical protein	-	6e-1	At1g20900	ESC (ESCAROLA)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.96	PtpAffx.11652.1.S1_at	CV263128	hypothetical protein	-	3e-34	At2g45440	DHDPS2 (DIHYDRODIPICOLINATE SYNTHASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.5	99.5	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
8.2	98.5	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.5	94.3	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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