Co-expression analysis

Gene ID PtpAffx.283.14.A1_x_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g20830: SUS1 (SUCROSE SYNTHASE 1) (HF=2e-34)
Module size 6 genes
NF 0.82
%ile 99.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8397.00.94PtpAffx.283.14.A1_x_atCV272972hypothetical protein-2e-34At5g20830SUS1 (SUCROSE SYNTHASE 1)O.I.H.G.S.X.
0.9199.20.95PtpAffx.283.1.A1_x_atCV226943hypothetical protein-5e-96At5g20830SUS1 (SUCROSE SYNTHASE 1)O.I.H.G.S.X.
0.8096.00.94Ptp.3758.1.S1_atCV251606hypothetical protein-2e-11At2g16700ADF5 (ACTIN DEPOLYMERIZING FACTOR 5)O.I.H.G.S.X.
0.7794.90.92Ptp.1701.1.S1_s_atCK093047glycosyltransferase, CAZy family GT8-1e-8At3g50760GATL2 (Galacturonosyltransferase-like 2)O.I.H.G.S.X.
0.6187.00.94Ptp.2441.1.S1_x_atCV225767hypothetical protein-2e-38At3g59480pfkB-type carbohydrate kinase family proteinO.I.H.G.S.X.
0.6086.00.94Ptp.5810.1.S1_s_atCF232478hypothetical protein-7e-37At1g23480ATCSLA03 (CELLULOSE SYNTHASE-LIKE A3)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.396.9GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.095.3GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.794.7GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.193.2GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM372093Clone3200_LPI5_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.389.8GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM372094Clone3200_LPI5_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage