Co-expression analysis

Gene ID	PtpAffx.283.1.A1_x_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g20830: SUS1 (SUCROSE SYNTHASE 1) (HF=5e-96)
Module size	6 genes
NF	0.82
%ile	99.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.95	PtpAffx.283.1.A1_x_at	CV226943	hypothetical protein	-	5e-96	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.83	97.0	0.94	PtpAffx.283.14.A1_x_at	CV272972	hypothetical protein	-	2e-34	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.94	Ptp.3758.1.S1_at	CV251606	hypothetical protein	-	2e-11	At2g16700	ADF5 (ACTIN DEPOLYMERIZING FACTOR 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.92	Ptp.1701.1.S1_s_at	CK093047	glycosyltransferase, CAZy family GT8	-	1e-8	At3g50760	GATL2 (Galacturonosyltransferase-like 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.94	Ptp.2441.1.S1_x_at	CV225767	hypothetical protein	-	2e-38	At3g59480	pfkB-type carbohydrate kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.94	Ptp.5810.1.S1_s_at	CF232478	hypothetical protein	-	7e-37	At1g23480	ATCSLA03 (CELLULOSE SYNTHASE-LIKE A3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.3	96.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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