Co-expression analysis

Gene ID	PtpAffx.28224.4.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g07745: RAD51D (ARABIDOPSIS HOMOLOG OF RAD51 D) (HF=4e-1)
Module size	6 genes
NF	0.22
%ile	40.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	88.1	0.90	PtpAffx.28224.4.A1_at	CV253046	-	-	4e-1	At1g07745	RAD51D (ARABIDOPSIS HOMOLOG OF RAD51 D)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.90	PtpAffx.140884.1.A1_s_at	CV241462	hypothetical protein	-	9e-4	At3g52990	pyruvate kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.90	PtpAffx.217881.1.S1_at	pmrna33325	hypothetical protein	-	1e+0	At4g10420	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.90	PtpAffx.205370.1.S1_at	pmrna10634	hypothetical protein	-	9e-1	At3g29040	protein serine/threonine kinase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.90	PtpAffx.217331.1.S1_at	pmrna32547	hypothetical protein	-	1e+0	At1g05290	transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.90	PtpAffx.205407.1.S1_at	pmrna10705	hypothetical protein	-	2e+0	At3g24068	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.1	95.5	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.6	94.5	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.1	93.2	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4	90.4	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1	88.6	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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