Co-expression analysis

Gene ID	PtpAffx.28023.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g44200: NEK6 ("NIMA (NEVER IN MITOSIS, GENE A)-RELATED 6") (HF=1e-2)
Module size	6 genes
NF	0.31
%ile	55.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.91	PtpAffx.28023.1.S1_at	CV274907	hypothetical protein	-	1e-2	At3g44200	NEK6 ("NIMA (NEVER IN MITOSIS, GENE A)-RELATED 6")	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.91	PtpAffx.41501.2.S1_at	BU885311	hypothetical protein	-	6e-1	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.92	Ptp.6433.1.S1_s_at	CK092975	-	-	1e-17	At3g24530	AAA-type ATPase family protein / ankyrin repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.90	Ptp.7836.1.S1_at	CV228341	hypothetical protein	-	6e-1	At4g10840	kinesin light chain-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.89	PtpAffx.16347.1.A1_at	DN489221	-	-	3e+0	At1g03150	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.89	PtpAffx.105894.1.S1_at	CK102938	hypothetical protein	-	5e-1	At5g13870	EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	94.0	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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