Co-expression analysis

Gene ID PtpAffx.27692.3.A1_a_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g17270: Mo25 family protein (HF=7e-52)
Module size 8 genes
NF 0.35
%ile 60.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5683.90.96PtpAffx.27692.3.A1_a_atCV258377hypothetical protein-7e-52At4g17270Mo25 family proteinO.I.H.G.S.X.
0.5582.20.97Ptp.6100.1.S1_s_atCV253262hypothetical protein-1e-13At3g57090BIGYINO.I.H.G.S.X.
0.4774.60.96PtpAffx.57941.1.S1_s_atCK318796hypothetical protein-5e-2At2g28625unknown proteinO.I.H.G.S.X.
0.4067.00.97PtpAffx.16432.1.S1_atDN485066hypothetical protein-3e-8At3g24010ING1 (INHIBITOR OF GROWTH 1)O.I.H.G.S.X.
0.3458.30.96PtpAffx.63114.1.S1_atCV253835hypothetical protein-7e-28At3g52220unknown proteinO.I.H.G.S.X.
0.2950.50.96Ptp.8010.1.A1_s_atCV253864hypothetical protein-4e-21At3g03330short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.2441.80.96Ptp.5110.1.S1_atCV264650hypothetical protein-1e-29At5g18110NCBP (NOVEL CAP-BINDING PROTEIN)O.I.H.G.S.X.
0.2340.50.96PtpAffx.145397.1.A1_s_atCV251388hypothetical protein-1e-35At4g35450AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2)O.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.694.5GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.088.0GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM372100Clone3200_LPI5_N+_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.987.2GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.583.5GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

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