Co-expression analysis

Gene ID	PtpAffx.27692.3.A1_a_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g17270: Mo25 family protein (HF=7e-52)
Module size	8 genes
NF	0.35
%ile	60.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	83.9	0.96	PtpAffx.27692.3.A1_a_at	CV258377	hypothetical protein	-	7e-52	At4g17270	Mo25 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.97	Ptp.6100.1.S1_s_at	CV253262	hypothetical protein	-	1e-13	At3g57090	BIGYIN	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.96	PtpAffx.57941.1.S1_s_at	CK318796	hypothetical protein	-	5e-2	At2g28625	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.97	PtpAffx.16432.1.S1_at	DN485066	hypothetical protein	-	3e-8	At3g24010	ING1 (INHIBITOR OF GROWTH 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	0.96	PtpAffx.63114.1.S1_at	CV253835	hypothetical protein	-	7e-28	At3g52220	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.96	Ptp.8010.1.A1_s_at	CV253864	hypothetical protein	-	4e-21	At3g03330	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.96	Ptp.5110.1.S1_at	CV264650	hypothetical protein	-	1e-29	At5g18110	NCBP (NOVEL CAP-BINDING PROTEIN)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.96	PtpAffx.145397.1.A1_s_at	CV251388	hypothetical protein	-	1e-35	At4g35450	AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	94.5	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.0	88.0	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.5	83.5	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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