Co-expression analysis

Gene ID PtpAffx.27553.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g04800: unknown protein (HF=1e+0)
Module size 6 genes
NF 0.07
%ile 14.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7192.60.83PtpAffx.27553.1.S1_atDN501136hypothetical protein-1e+0At2g04800unknown proteinO.I.H.G.S.X.
0.2034.60.88PtpAffx.202202.1.S1_x_atpmrna4400hypothetical protein-1e+0At5g44920Toll-Interleukin-Resistance (TIR) domain-containing proteinO.I.H.G.S.X.
0.1525.30.84PtpAffx.225165.1.S1_atpmrna44309hypothetical protein-6e-37At5g24080protein kinase family proteinO.I.H.G.S.X.
0.058.30.88PtpAffx.3645.1.S1_atBP934882catalase-0At4g35090CAT2 (CATALASE 2)O.I.H.G.S.X.
0.046.90.83PtpAffx.208770.1.S1_s_atpmrna17383hypothetical protein-6e-1At4g14815protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.035.20.88Ptp.3180.1.S1_x_atCV256657hypothetical protein-3e-15At1g35720ANNAT1 (ANNEXIN ARABIDOPSIS 1)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.3153.70.76PtpAffx.210868.1.S1_s_atpmrna21346hypothetical protein-3e-1At1g61340F-box family proteinO.I.H.G.S.X.
0.3153.70.88PtpAffx.225178.1.S1_atpmrna44327hypothetical protein-1e-1At1g18590SOT17 (SULFOTRANSFERASE 17)O.I.H.G.S.X.
0.2950.50.90Ptp.6983.1.S1_s_atCV241570hypothetical protein-1e-1At4g16160mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family proteinO.I.H.G.S.X.
0.2747.10.89PtpAffx.9911.1.S1_atCN523707hypothetical protein-1e-5At3g16270-O.I.H.G.S.X.
0.2747.10.92PtpAffx.5514.7.A1_a_atCV245932hypothetical protein-1e+0At1g21323unknown proteinO.I.H.G.S.X.
0.2441.80.76PtpAffx.207039.1.S1_s_atpmrna13949hypothetical protein-2e-4At3g58850PAR2 (PHY RAPIDLY REGULATED 2)O.I.H.G.S.X.
0.2238.30.91PtpAffx.204681.1.S1_atpmrna9216hypothetical protein-4e-106At4g34100protein binding / zinc ion bindingO.I.H.G.S.X.
0.2136.50.86PtpAffx.132097.1.A1_atBP932694hypothetical protein-3e-2At1g15040glutamine amidotransferase-relatedO.I.H.G.S.X.
0.2136.50.87PtpAffx.1066.5.A1_x_atCV258984hypothetical protein-5e+0At5g15190unknown proteinO.I.H.G.S.X.
0.1932.70.87PtpAffx.18585.1.A1_atCV241884--2e+0At4g05230ubiquitin family proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.199.3GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.393.7GSM327380Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.293.5GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM327406Populus balsamifera_1006_young_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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