Co-expression analysis

Gene ID	PtpAffx.27445.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g10300: calcium-binding EF hand family protein (HF=8e-1)
Module size	6 genes
NF	0.10
%ile	19.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.92	PtpAffx.27445.1.S1_at	DN495793	-	-	8e-1	At3g10300	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.95	Ptp.5733.1.S1_s_at	AJ777863	hypothetical protein	-	0	Atmg01190	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.95	Ptp.2592.3.S1_x_at	CV281081	thioredoxin h	-	9e-9	At1g19730	ATTRX4	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.95	Ptp.8000.1.S1_at	DN484105	hypothetical protein	-	0	Atmg01190	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.94	Ptp.2351.1.S1_s_at	CF936500	hypothetical protein	-	2e-6	At4g30010	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.92	Ptp.5082.1.S1_s_at	CX654214	hypothetical protein	-	8e-41	At3g52880	monodehydroascorbate reductase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.9	95.1	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

A co-expression module including the grape gene, 1615302_at, orthologous to the query gene, PtpAffx.27445.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	84.3	1615302_at	At3g10300	-	-	7e-1	At3g44716	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	93.6	1616780_at	At3g10300	hypothetical protein LOC100265405	-	2e-8	At5g60210	-	O.I.	H.G.	S.X.	Please select
0.74	91.0	1610422_at	At3g10300	hypothetical protein LOC100246625	-	5e-12	At3g51670	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	O.I.	H.G.	S.X.	Please select
0.70	88.6	1620583_s_at	At3g10300	hypothetical protein LOC100247041	-	5e-1	At4g24231	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	1619869_at	At3g10300	hypothetical protein LOC100263034	-	3e-1	At4g20970	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.61	83.2	1611158_at	At3g10300	hypothetical protein LOC100260886	-	5e-12	At1g35780	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	79.4	1622002_at	At3g10300	hypothetical protein LOC100264846	-	2e-1	At1g29951	CPuORF35 (Conserved peptide upstream open reading frame 35)	O.I.	H.G.	S.X.	Please select
0.53	75.2	1620164_at	At3g10300	hypothetical protein LOC100263547	-	6e+0	At5g10160	beta-hydroxyacyl-ACP dehydratase, putative	O.I.	H.G.	S.X.	Please select
0.52	73.9	1617368_at	At3g10300	similar to beta-1,3-glucanase	-	1e+0	At2g47110	UBQ6	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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