Co-expression analysis

Gene ID PtpAffx.27419.2.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g25735: unknown protein (HF=2e-1)
Module size 6 genes
NF 0.06
%ile 13.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8397.00.93PtpAffx.27419.2.A1_atCK096272hypothetical protein-2e-1At2g25735unknown proteinO.I.H.G.S.X.
0.0914.60.93Ptp.7598.1.S1_atCK109628--4e-2At1g19990unknown proteinO.I.H.G.S.X.
0.058.30.93PtpAffx.249.525.S1_atBU832688--3e-1At1g59700ATGSTU16 (GLUTATHIONE S-TRANSFERASE TAU 16)O.I.H.G.S.X.
0.046.90.94PtpAffx.149708.1.A1_atCV242711--4e-4At5g38380-O.I.H.G.S.X.
0.046.90.94PtpAffx.65111.1.A1_atCK094652--1e+0At5g60480AtHB26 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 26)O.I.H.G.S.X.
0.035.20.93Ptp.328.1.A1_atCK088363jumonji domain protein-1e+0At3g56120Met-10+ like family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.298.1GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
7.098.0GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.697.2GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.096.6GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
4.596.1GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
4.395.8GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
3.193.2GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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