Co-expression analysis

Gene ID	PtpAffx.26613.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g18480: CHLI1 (HF=9e-52)
Module size	9 genes
NF	0.66
%ile	94.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.38	63.7	0.97	PtpAffx.26613.1.S1_at	CX175693	hypothetical protein	-	9e-52	At4g18480	CHLI1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.75	94.1	0.97	Ptp.4956.1.A1_x_at	CV240469	hypothetical protein	-	7e-12	At5g14320	30S ribosomal protein S13, chloroplast (CS13)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.75	94.1	0.98	Ptp.5695.1.S1_a_at	CV237546	hypothetical protein	-	7e-21	At1g48350	ribosomal protein L18 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.74	93.8	0.97	PtpAffx.160484.1.A1_s_at	CV231727	hypothetical protein	-	3e-13	At5g11450	oxygen-evolving complex-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	0.97	Ptp.6627.1.S1_at	CV245106	hypothetical protein	-	4e-17	At5g54600	50S ribosomal protein L24, chloroplast (CL24)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.70	91.7	0.98	Ptp.5722.1.S1_at	CV226697	hypothetical protein	-	2e-15	At1g64510	ribosomal protein S6 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.97	PtpAffx.53128.1.S1_at	CV238625	-	-	7e-25	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.54	80.8	0.97	PtpAffx.9317.1.S1_at	CV241750	hypothetical protein	-	1e+0	At4g14385	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.98	PtpAffx.14790.1.A1_s_at	CK091627	hypothetical protein	-	1e-1	At2g24090	ribosomal protein L35 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	96.2	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6	84.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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