Co-expression analysis

Gene ID PtpAffx.26517.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g53450: unknown protein (HF=4e+0)
Module size 6 genes
NF 0.37
%ile 64.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.92PtpAffx.26517.1.S1_atCK094602hypothetical protein-4e+0At3g53450unknown proteinO.I.H.G.S.X.
0.6086.00.92PtpAffx.8016.1.S1_atCX182129hypothetical protein-3e-28At5g41410BEL1 (BELL 1)O.I.H.G.S.X.
0.3863.70.92PtpAffx.114352.1.A1_atCV262393hypothetical protein-2e+0At1g80133unknown proteinO.I.H.G.S.X.
0.2747.10.92PtpAffx.135805.1.A1_atCK091310--8e-25At1g73980phosphoribulokinase/uridine kinase family proteinO.I.H.G.S.X.
0.2747.10.93PtpAffx.43233.1.A1_atCV283197hypothetical protein-2e-40At2g45870unknown proteinO.I.H.G.S.X.
0.2441.80.92PtpAffx.7198.1.S1_a_atCK106201--1e+0At3g50960PLP3a (Phosducin-like protein 3 homolog)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.396.9GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.196.8GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.195.5GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.193.2GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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