Co-expression analysis

Gene ID	PtpAffx.265.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g47060: serine/threonine protein kinase, putative (HF=3e-89)
Module size	6 genes
NF	0.65
%ile	93.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.92	PtpAffx.265.1.A1_at	CV261776	hypothetical protein	-	3e-89	At2g47060	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.92	PtpAffx.2103.1.A1_s_at	CV246207	hypothetical protein	-	3e-8	At4g35320	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.91	PtpAffx.30128.1.S1_at	CV244941	hypothetical protein	-	3e+0	At2g23910	cinnamoyl-CoA reductase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.95	PtpAffx.210959.1.S1_x_at	pmrna21534	hypothetical protein	-	8e-23	At1g54570	esterase/lipase/thioesterase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.91	PtpAffx.94576.1.A1_a_at	CV282515	hypothetical protein	-	4e-1	At4g08320	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.94	PtpAffx.22209.1.S1_at	CK094003	-	-	8e+0	At5g20165	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.6	97.9	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
6.0	97.5	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.9	95.1	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.8	92.1	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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