CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.26497.1.S1_at

Gene name
Homology with Arabidopsis Similar to At1g76690: OPR2 (HF=3e-52)

Module size 6 genes

NF 0.20

%ile 37.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.42 68.6 0.83 PtpAffx.26497.1.S1_at CK105060 - - 3e-52 At1g76690 OPR2 O.I. H.G. S.X.
0.33 57.5 0.87 PtpAffx.57734.1.S1_at DN486150 - - 3e-1 At1g56200 emb1303 (embryo defective 1303) O.I. H.G. S.X.
0.32 55.2 0.86 Ptp.4852.1.A1_at CV282615 hypothetical protein - 5e-22 At5g50100 - O.I. H.G. S.X.
0.18 30.8 0.86 PtpAffx.73516.1.S1_at CN524588 hypothetical protein - 4e-45 At5g01410 RSR4 (REDUCED SUGAR RESPONSE 4) O.I. H.G. S.X.
0.12 19.6 0.88 Ptp.4830.1.S1_at CX282622 hypothetical protein - 2e-13 At4g03260 leucine-rich repeat family protein O.I. H.G. S.X.
0.07 11.6 0.88 PtpAffx.55455.1.S1_a_at CV242141 beta-ketoacyl-coa synthase family protein /// beta-ketoacyl-coa synthase family protein - 4e-12 At1g04220 KCS2 (3-KETOACYL-COA SYNTHASE 2) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.31	53.7	0.83	Ptp.8102.1.S1_at	DN492513	-	-	5e+0	Atcg01000	-	O.I.	H.G.	S.X.
0.31	53.7	0.88	Ptp.4852.1.A1_s_at	CV282615	hypothetical protein	-	5e-22	At5g50100	-	O.I.	H.G.	S.X.
0.31	53.7	0.89	Ptp.5017.1.S1_at	CV276285	hypothetical protein	-	1e-10	At3g18040	MPK9 (MAP KINASE 9)	O.I.	H.G.	S.X.
0.29	50.5	0.83	PtpAffx.213141.1.S1_s_at	pmrna25714	hypothetical protein	-	3e-1	At2g43290	MSS3 (multicopy suppressors of snf4 deficiency in yeast 3)	O.I.	H.G.	S.X.
0.23	40.5	0.79	Ptp.5159.2.S1_at	CK094656	-	-	4e+0	At3g26450	major latex protein-related / MLP-related	O.I.	H.G.	S.X.
0.22	38.3	0.81	PtpAffx.33507.1.S1_at	CV256875	-	-	8e-1	At2g14846	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.
0.21	36.5	0.80	PtpAffx.80113.1.S1_s_at	BU811053	hypothetical protein	-	1e+0	At3g23870	permease-related	O.I.	H.G.	S.X.
0.21	36.5	0.84	PtpAffx.20151.2.S1_a_at	CF936756	hypothetical protein	-	7e-2	At3g24100	-	O.I.	H.G.	S.X.
0.18	30.8	0.89	PtpAffx.30445.2.S1_a_at	CV275763	hypothetical protein	-	2e-32	At3g18040	MPK9 (MAP KINASE 9)	O.I.	H.G.	S.X.
0.18	30.8	0.89	PtpAffx.5622.2.S1_s_at	CV241605	hypothetical protein	-	2e-9	At2g22830	SQE2 (squalene epoxidase 2)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.1 96.8 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.6 96.2 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.4 95.9 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.2 95.6 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.9 95.1 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.8 94.9 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.6 94.5 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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