Co-expression analysis

Gene ID	PtpAffx.26497.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g76690: OPR2 (HF=3e-52)
Module size	6 genes
NF	0.20
%ile	37.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.42	68.6	0.83	PtpAffx.26497.1.S1_at	CK105060	-	-	3e-52	At1g76690	OPR2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.87	PtpAffx.57734.1.S1_at	DN486150	-	-	3e-1	At1g56200	emb1303 (embryo defective 1303)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.86	Ptp.4852.1.A1_at	CV282615	hypothetical protein	-	5e-22	At5g50100	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.86	PtpAffx.73516.1.S1_at	CN524588	hypothetical protein	-	4e-45	At5g01410	RSR4 (REDUCED SUGAR RESPONSE 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.88	Ptp.4830.1.S1_at	CX282622	hypothetical protein	-	2e-13	At4g03260	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.88	PtpAffx.55455.1.S1_a_at	CV242141	beta-ketoacyl-coa synthase family protein /// beta-ketoacyl-coa synthase family protein	-	4e-12	At1g04220	KCS2 (3-KETOACYL-COA SYNTHASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	96.8	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.4	95.9	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.2	95.6	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.9	95.1	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.8	94.9	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the maize gene, Zm.7548.1.A1_at, orthologous to the query gene, PtpAffx.26497.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	81.7	Zm.7548.1.A1_at	At1g76690	12-oxo-phytodienoic acid reductase5	-	5e-11	At1g76690	OPR2	O.I.	H.G.	S.X.	Please select
0.55	71.6	Zm.10787.1.A1_at	At1g76690	hypothetical protein LOC100274116	-	2e-13	At3g55000	TON1A (TONNEAU 1)	O.I.	H.G.	S.X.	Please select
0.47	59.9	Zm.1663.1.A1_at	At1g76690	VQ motif family protein	-	3e+0	At3g04600	tRNA synthetase class I (W and Y) family protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	Zm.16308.1.S1_s_at	At1g76690	hypothetical protein LOC100191269	-	8e-4	At4g34660	SH3 domain-containing protein 2 (SH3P2)	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.10974.1.A1_at	At1g76690	-	-	4e+0	At1g71840	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.12638.1.S1_at	At1g76690	hypothetical protein LOC100216922	-	8e-7	At2g34060	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.15743.1.A1_at	At1g76690	hypothetical protein LOC100272480	-	1e+1	At4g03965	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.15735.1.S1_at	At1g76690	-	-	2e+0	At1g76590	zinc-binding family protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.8655.1.A1_at	At1g76690	-	-	5e+0	At4g14540	NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)	O.I.	H.G.	S.X.	Please select
0.27	24.6	ZmAffx.406.2.A1_at	At1g76690	-	-	2e-1	At1g74650	MYB31 (MYB DOMAIN PROTEIN 31)	O.I.	H.G.	S.X.	Please select
0.26	22.7	Zm.11617.1.A1_at	At1g76690	-	-	1e+0	At5g03150	JKD (JACKDAW)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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