Co-expression analysis

Gene ID	PtpAffx.26497.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g76690: OPR2 (HF=3e-52)
Module size	6 genes
NF	0.20
%ile	37.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.42	68.6	0.83	PtpAffx.26497.1.S1_at	CK105060	-	-	3e-52	At1g76690	OPR2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.87	PtpAffx.57734.1.S1_at	DN486150	-	-	3e-1	At1g56200	emb1303 (embryo defective 1303)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.86	Ptp.4852.1.A1_at	CV282615	hypothetical protein	-	5e-22	At5g50100	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.86	PtpAffx.73516.1.S1_at	CN524588	hypothetical protein	-	4e-45	At5g01410	RSR4 (REDUCED SUGAR RESPONSE 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.88	Ptp.4830.1.S1_at	CX282622	hypothetical protein	-	2e-13	At4g03260	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.88	PtpAffx.55455.1.S1_a_at	CV242141	beta-ketoacyl-coa synthase family protein /// beta-ketoacyl-coa synthase family protein	-	4e-12	At1g04220	KCS2 (3-KETOACYL-COA SYNTHASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	96.8	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.4	95.9	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.2	95.6	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.9	95.1	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.8	94.9	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the wheat gene, Ta.5509.1.S1_at, orthologous to the query gene, PtpAffx.26497.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.1	Ta.5509.1.S1_at	At1g76690	-	-	1e-17	At1g76690	OPR2	O.I.	H.G.	S.X.	Please select
0.56	78.6	Ta.4059.1.S1_a_at	At1g76690	-	-	6e-42	At3g09550	protein binding	O.I.	H.G.	S.X.	Please select
0.52	73.7	TaAffx.19824.2.S1_s_at	At1g76690	-	-	1e-9	At4g27020	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	73.7	TaAffx.17098.1.S1_at	At1g76690	-	-	3e-2	At2g45410	LBD19 (LOB DOMAIN-CONTAINING PROTEIN 19)	O.I.	H.G.	S.X.	Please select
0.51	73.0	Ta.11699.1.A1_at	At1g76690	-	-	4e+0	At3g20370	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.48	69.0	TaAffx.110862.1.S1_s_at	At1g76690	-	-	7e-1	At2g38695	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	TaAffx.108337.1.S1_s_at	At1g76690	-	-	9e-13	At2g30650	catalytic	O.I.	H.G.	S.X.	Please select
0.46	66.8	Ta.10740.1.S1_x_at	At1g76690	-	-	8e+0	At3g60770	40S ribosomal protein S13 (RPS13A)	O.I.	H.G.	S.X.	Please select
0.46	66.8	Ta.13260.1.A1_at	At1g76690	-	-	4e-4	At5g62960	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	65.2	TaAffx.50947.1.S1_at	At1g76690	-	-	2e-5	At1g71020	armadillo/beta-catenin repeat family protein / U-box domain-containing protein	O.I.	H.G.	S.X.	Please select
0.42	60.9	TaAffx.100035.1.S1_at	At1g76690	-	-	9e-6	At5g50210	QS (QUINOLINATE SYNTHASE)	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.5500.2.S1_x_at	At1g76690	-	-	4e+0	At3g53870	40S ribosomal protein S3 (RPS3B)	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.11560.3.S1_at	At1g76690	-	-	2e-5	At4g31410	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	Ta.3420.2.S1_at	At1g76690	-	-	7e-8	At1g06310	ACX6 (ACYL-COA OXIDASE 6)	O.I.	H.G.	S.X.	Please select
0.39	56.1	Ta.5500.2.S1_a_at	At1g76690	-	-	4e+0	At3g53870	40S ribosomal protein S3 (RPS3B)	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.22677.1.S1_at	At1g76690	Leucine-rich repeat protein	-	2e-4	At5g21090	leucine-rich repeat protein, putative	O.I.	H.G.	S.X.	Please select
0.37	53.0	Ta.6039.2.S1_at	At1g76690	-	-	2e-8	At4g30490	AFG1-like ATPase family protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	Ta.4273.1.S1_at	At1g76690	-	-	1e-4	At5g54500	FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.36	51.9	TaAffx.113489.1.S1_at	At1g76690	-	-	5e-10	At3g12800	SDRB (SHORT-CHAIN DEHYDROGENASE-REDUCTASE B)	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.6750.3.S1_at	At1g76690	-	-	1e-23	At5g65940	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.11338.3.S1_a_at	At1g76690	-	-	4e+0	At3g47200	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	TaAffx.2187.1.S1_at	At1g76690	-	-	4e-2	At3g47300	SELT (SELT-LIKE PROTEIN PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.34	48.1	Ta.5228.2.A1_a_at	At1g76690	-	-	2e+1	At5g38050	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.11338.1.S1_at	At1g76690	-	-	3e+0	At4g08593	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.6327.1.S1_at	At1g76690	-	-	1e-2	At5g61530	small G protein family protein / RhoGAP family protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	TaAffx.119956.1.A1_at	At1g76690	-	-	2e+1	At5g63510	GAMMA CAL1 (GAMMA CARBONIC ANHYDRASE LIKE 1)	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.27228.1.S1_at	At1g76690	-	-	5e-2	At2g15390	FUT4	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.6327.3.S1_a_at	At1g76690	-	-	1e+0	At3g01440	oxygen evolving enhancer 3 (PsbQ) family protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.9437.2.S1_a_at	At1g76690	-	-	6e-2	At5g43100	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	Ta.22534.1.S1_a_at	At1g76690	-	-	6e-3	At1g50740	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.28879.2.S1_x_at	At1g76690	-	-	3e-3	At1g34750	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.24	30.3	Ta.7147.2.S1_at	At1g76690	-	-	9e-9	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	O.I.	H.G.	S.X.	Please select
0.24	30.3	Ta.7449.1.S1_at	At1g76690	-	-	2e-3	At5g63740	zinc finger protein-related	O.I.	H.G.	S.X.	Please select
0.20	24.0	Ta.28879.1.S1_a_at	At1g76690	-	-	5e-8	At1g22280	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.19	22.4	Ta.7474.2.S1_a_at	At1g76690	-	-	5e-9	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	O.I.	H.G.	S.X.	Please select
0.16	18.2	Ta.1366.1.S1_at	At1g76690	-	-	3e-6	At4g16210	ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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