Co-expression analysis

Gene ID PtpAffx.26497.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g76690: OPR2 (HF=3e-52)
Module size 6 genes
NF 0.20
%ile 37.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4268.60.83PtpAffx.26497.1.S1_atCK105060--3e-52At1g76690OPR2O.I.H.G.S.X.
0.3357.50.87PtpAffx.57734.1.S1_atDN486150--3e-1At1g56200emb1303 (embryo defective 1303)O.I.H.G.S.X.
0.3255.20.86Ptp.4852.1.A1_atCV282615hypothetical protein-5e-22At5g50100-O.I.H.G.S.X.
0.1830.80.86PtpAffx.73516.1.S1_atCN524588hypothetical protein-4e-45At5g01410RSR4 (REDUCED SUGAR RESPONSE 4)O.I.H.G.S.X.
0.1219.60.88Ptp.4830.1.S1_atCX282622hypothetical protein-2e-13At4g03260leucine-rich repeat family proteinO.I.H.G.S.X.
0.0711.60.88PtpAffx.55455.1.S1_a_atCV242141beta-ketoacyl-coa synthase family protein /// beta-ketoacyl-coa synthase family protein-4e-12At1g04220KCS2 (3-KETOACYL-COA SYNTHASE 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.196.8GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.696.2GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.495.9GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.295.6GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.995.1GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.894.9GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.894.9GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.694.5GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.594.3GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.293.5GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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