Co-expression analysis

Gene ID	PtpAffx.26369.3.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g34160: nucleic acid binding (HF=2e+0)
Module size	11 genes
NF	0.82
%ile	99.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	87.0	0.97	PtpAffx.26369.3.S1_s_at	CK104729	hypothetical protein	-	2e+0	At2g34160	nucleic acid binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.90	97.9	0.98	PtpAffx.4669.4.S1_at	BU811735	-	-	5e+0	At5g63580	FLS2 (FLAVONOL SYNTHASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.87	97.5	0.97	Ptp.893.2.S1_a_at	CK089564	-	-	2e-2	At2g27385	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.86	97.4	0.98	Ptp.2250.1.S1_at	CK090010	-	-	9e-1	At2g10940	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.86	97.4	0.98	Ptp.7797.1.S1_at	BU833046	-	-	7e+0	At4g23882	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.83	97.0	0.98	Ptp.5976.1.S1_at	CF230441	-	-	2e+0	At4g12480	pEARLI 1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.82	96.3	0.97	PtpAffx.13092.2.A1_at	CK089452	-	-	6e-1	At1g15270	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.82	96.3	0.98	Ptp.4898.1.S1_at	BI126840	-	-	1e-16	At4g17090	CT-BMY (CHLOROPLAST BETA-AMYLASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.98	Ptp.4880.1.S1_at	CK089952	-	-	1e+0	At1g32070	ATNSI (NUCLEAR SHUTTLE INTERACTING)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.70	91.7	0.98	PtpAffx.61208.1.S1_at	BU835871	-	-	4e-1	At5g35530	40S ribosomal protein S3 (RPS3C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.98	PtpAffx.9876.1.S1_at	AJ773478	hypothetical protein	-	3e-39	At4g33110	coclaurine N-methyltransferase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	96.8	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.9	96.5	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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