Co-expression analysis

Gene ID	PtpAffx.2601.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g27750: ISI1 (IMPAIRED SUCROSE INDUCTION 1) (HF=4e-1)
Module size	6 genes
NF	0.70
%ile	96.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.99	PtpAffx.2601.1.S1_at	DN491679	hypothetical protein	-	4e-1	At4g27750	ISI1 (IMPAIRED SUCROSE INDUCTION 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.91	99.2	0.99	PtpAffx.213252.1.S1_at	pmrna25920	hypothetical protein	-	8e-45	At2g41210	PIP5K5 (PHOSPHATIDYLINOSITOL- 4-PHOSPHATE 5-KINASE 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	1.00	PtpAffx.200584.1.S1_at	pmrna1157	hypothetical protein	-	2e-1	At3g22600	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	0.99	PtpAffx.206303.1.S1_at	pmrna12504	hypothetical protein	-	9e-14	At3g45810	ferric reductase-like transmembrane component family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.99	PtpAffx.217360.1.S1_at	pmrna32584	hypothetical protein	-	6e-27	At4g04340	early-responsive to dehydration protein-related / ERD protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.99	PtpAffx.207018.1.S1_at	pmrna13901	hypothetical protein	-	1e-104	At5g09550	RAB GDP-dissociation inhibitor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.9	95.1	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.5	94.3	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.2	93.5	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.0	92.9	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.8	92.1	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage