Co-expression analysis

Gene ID	PtpAffx.25959.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g20160: ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (HF=2e+0)
Module size	6 genes
NF	0.04
%ile	9.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	88.1	0.91	PtpAffx.25959.1.S1_at	DN498122	hypothetical protein	-	2e+0	At5g20160	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.92	Ptp.2432.1.S1_a_at	CK093484	hypothetical protein	-	4e-19	At4g27745	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.91	PtpAffx.9361.1.A1_at	CV241621	hypothetical protein	-	1e-6	At1g77660	MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.92	PtpAffx.37459.3.S1_at	CV242690	hypothetical protein	-	8e-2	At2g30590	WRKY21	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.91	PtpAffx.4431.4.A1_a_at	CV256409	hypothetical protein	-	2e-34	At1g30330	ARF6 (AUXIN RESPONSE FACTOR 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.91	PtpAffx.18595.1.S1_at	BU868736	-	-	2e-19	At2g39020	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	95.8	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.992.1.A1_at, orthologous to the query gene, PtpAffx.25959.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.8	ZmAffx.992.1.A1_at	At5g20160	-	-	8e-1	At2g02570	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.6017.1.A1_at	At5g20160	hypothetical protein LOC100274747 /// hypothetical protein LOC100277021	-	2e+0	At4g08230	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.12483.1.A1_at	At5g20160	hypothetical protein LOC100273621	-	5e+0	At5g25540	CID6 (CTC-Interacting Domain 6)	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.6719.1.A1_at	At5g20160	-	-	8e-1	At4g01960	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	ZmAffx.1074.1.A1_at	At5g20160	-	-	1e+1	At2g42210	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	O.I.	H.G.	S.X.	Please select
0.34	37.2	Zm.11596.1.A1_at	At5g20160	-	-	7e-2	At2g46308	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.4926.1.A1_at	At5g20160	propionyl-CoA carboxylase	-	2e-7	At1g01770	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	ZmAffx.1046.1.A1_at	At5g20160	-	-	8e-1	At1g79160	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.4166.1.A1_at	At5g20160	hypothetical protein LOC100191831	-	1e+0	At1g17145	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.13740.1.A1_at	At5g20160	-	-	2e-16	At2g29140	APUM3 (Arabidopsis Pumilio 3)	O.I.	H.G.	S.X.	Please select
0.30	29.8	ZmAffx.118.1.S1_at	At5g20160	-	-	8e-1	At5g59470	PQ-loop repeat family protein / transmembrane family protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.6376.1.A1_at	At5g20160	-	-	2e-1	At1g68560	XYL1 (ALPHA-XYLOSIDASE 1)	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.17257.1.A1_at	At5g20160	hypothetical protein LOC100273469	-	5e-13	At2g41540	GPDHC1	O.I.	H.G.	S.X.	Please select
0.28	28.1	ZmAffx.563.1.A1_at	At5g20160	-	-	3e+0	At5g67560	ATARLA1D (ADP-ribosylation factor-like A1D)	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.8632.1.A1_at	At5g20160	-	-	5e+0	At3g55672	-	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.13054.1.A1_at	At5g20160	hypothetical protein LOC100273794	-	9e-6	At2g43080	AT-P4H-1 (A. THALIANA P4H ISOFORM 1)	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.3959.1.A1_at	At5g20160	hypothetical protein LOC100193090	-	4e-21	At1g34020	transporter-related	O.I.	H.G.	S.X.	Please select
0.25	21.3	Zm.11196.1.A1_at	At5g20160	hypothetical protein LOC100275201	-	1e+0	At5g64160	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	Zm.15546.1.A1_at	At5g20160	hypothetical protein LOC100276392	-	1e+0	At5g01734	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	ZmAffx.571.1.S1_at	At5g20160	Hypothetical protein LOC100191288	-	3e+0	At5g20230	ATBCB (ARABIDOPSIS BLUE-COPPER-BINDING PROTEIN)	O.I.	H.G.	S.X.	Please select
0.24	19.8	Zm.41.1.S1_at	At5g20160	calcium dependent protein kinase1	-	1e-16	At2g46700	calcium-dependent protein kinase, putative / CDPK, putative	O.I.	H.G.	S.X.	Please select
0.23	18.6	Zm.13669.2.A1_at	At5g20160	-	-	2e-9	At4g02630	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.21	15.5	ZmAffx.1040.1.A1_at	At5g20160	-	-	3e+0	At1g49590	formin-binding protein-related	O.I.	H.G.	S.X.	Please select
0.20	14.2	ZmAffx.190.1.A1_at	At5g20160	-	-	5e-2	At3g56910	PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.18	11.6	Zm.10332.1.A1_at	At5g20160	-	-	2e+0	At3g28990	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	10.6	Zm.12405.1.A1_at	At5g20160	alpha/beta hydrolase fold	-	2e+0	At1g64340	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	5.3	ZmAffx.889.1.S1_at	At5g20160	pre-mRNA processing factor	-	8e-7	At2g40650	pre-mRNA splicing factor PRP38 family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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