Co-expression analysis

Gene ID	PtpAffx.25959.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g20160: ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (HF=2e+0)
Module size	6 genes
NF	0.04
%ile	9.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	88.1	0.91	PtpAffx.25959.1.S1_at	DN498122	hypothetical protein	-	2e+0	At5g20160	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.92	Ptp.2432.1.S1_a_at	CK093484	hypothetical protein	-	4e-19	At4g27745	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.91	PtpAffx.9361.1.A1_at	CV241621	hypothetical protein	-	1e-6	At1g77660	MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.92	PtpAffx.37459.3.S1_at	CV242690	hypothetical protein	-	8e-2	At2g30590	WRKY21	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.91	PtpAffx.4431.4.A1_a_at	CV256409	hypothetical protein	-	2e-34	At1g30330	ARF6 (AUXIN RESPONSE FACTOR 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.91	PtpAffx.18595.1.S1_at	BU868736	-	-	2e-19	At2g39020	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	95.8	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the wheat gene, Ta.22389.1.S1_at, orthologous to the query gene, PtpAffx.25959.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	Ta.22389.1.S1_at	At5g20160	-	-	2e-1	At1g78480	prenyltransferase/squalene oxidase repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.55	76.8	Ta.3442.1.S1_at	At5g20160	-	-	6e+0	At5g13050	5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE)	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.30439.1.S1_at	At5g20160	-	-	7e+0	At2g38530	LTP2 (LIPID TRANSFER PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.50	72.4	TaAffx.66041.1.S1_at	At5g20160	-	-	2e+0	At3g18280	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	TaAffx.113825.1.S1_at	At5g20160	-	-	7e+0	At5g58970	ATUCP2 (UNCOUPLING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.38	54.7	TaAffx.38572.2.S1_at	At5g20160	-	-	4e-3	At5g60690	REV (REVOLUTA)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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