CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.25959.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g20160: ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (HF=2e+0)

Module size 6 genes

NF 0.04

%ile 9.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 88.1 0.91 PtpAffx.25959.1.S1_at DN498122 hypothetical protein - 2e+0 At5g20160 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein O.I. H.G. S.X.
0.33 57.5 0.92 Ptp.2432.1.S1_a_at CK093484 hypothetical protein - 4e-19 At4g27745 - O.I. H.G. S.X.
0.09 14.6 0.91 PtpAffx.9361.1.A1_at CV241621 hypothetical protein - 1e-6 At1g77660 MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related O.I. H.G. S.X.
0.04 6.9 0.92 PtpAffx.37459.3.S1_at CV242690 hypothetical protein - 8e-2 At2g30590 WRKY21 O.I. H.G. S.X.
0.03 5.2 0.91 PtpAffx.4431.4.A1_a_at CV256409 hypothetical protein - 2e-34 At1g30330 ARF6 (AUXIN RESPONSE FACTOR 6) O.I. H.G. S.X.
0.01 2.2 0.91 PtpAffx.18595.1.S1_at BU868736 - - 2e-19 At2g39020 GCN5-related N-acetyltransferase (GNAT) family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.3 95.8 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1 88.6 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0 88.0 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM362883 Clone1979_LPI2_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9 87.2 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7 85.5 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the soybean gene, Gma.16783.1.A1_at, orthologous to the query gene, PtpAffx.25959.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 91.5 Gma.16783.1.A1_at At5g20160 - - 3e-1 At5g49120 senescence-associated protein-related O.I. H.G. S.X.
0.80 91.5 Gma.5134.2.S1_at At5g20160 - - 4e-4 At3g22550 senescence-associated protein-related O.I. H.G. S.X.
0.80 91.5 Gma.16783.2.S1_s_at At5g20160 - - 1e-3 At3g22550 senescence-associated protein-related O.I. H.G. S.X.
0.73 88.9 GmaAffx.41575.1.S1_at At5g20160 - - 2e-1 At1g15125 S-adenosylmethionine-dependent methyltransferase/ methyltransferase O.I. H.G. S.X.
0.67 86.1 Gma.5134.1.S1_at At5g20160 - - 1e+0 At3g63210 MARD1 O.I. H.G. S.X.
0.13 16.3 Gma.4660.2.S1_s_at At5g20160 MYB transcription factor MYB143 /// MYB transcription factor MYB183 - 5e-14 At1g19000 myb family transcription factor O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage