Co-expression analysis

Gene ID PtpAffx.25959.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g20160: ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (HF=2e+0)
Module size 6 genes
NF 0.04
%ile 9.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6388.10.91PtpAffx.25959.1.S1_atDN498122hypothetical protein-2e+0At5g20160ribosomal protein L7Ae/L30e/S12e/Gadd45 family proteinO.I.H.G.S.X.
0.3357.50.92Ptp.2432.1.S1_a_atCK093484hypothetical protein-4e-19At4g27745-O.I.H.G.S.X.
0.0914.60.91PtpAffx.9361.1.A1_atCV241621hypothetical protein-1e-6At1g77660MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-relatedO.I.H.G.S.X.
0.046.90.92PtpAffx.37459.3.S1_atCV242690hypothetical protein-8e-2At2g30590WRKY21O.I.H.G.S.X.
0.035.20.91PtpAffx.4431.4.A1_a_atCV256409hypothetical protein-2e-34At1g30330ARF6 (AUXIN RESPONSE FACTOR 6)O.I.H.G.S.X.
0.012.20.91PtpAffx.18595.1.S1_atBU868736--2e-19At2g39020GCN5-related N-acetyltransferase (GNAT) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.395.8GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.188.6GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.088.0GSM328274Populus x canescens leaf hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM362883Clone1979_LPI2_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.987.2GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.785.5GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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