CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.2587.2.S1_at

Gene name
Homology with Arabidopsis Similar to At1g12520: ATCCS (COPPER CHAPERONE FOR SOD1) (HF=6e-20)

Module size 12 genes

NF 0.18

%ile 34.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.49 75.7 0.88 PtpAffx.2587.2.S1_at CF233078 - - 6e-20 At1g12520 ATCCS (COPPER CHAPERONE FOR SOD1) O.I. H.G. S.X.
0.32 55.2 0.93 Ptp.6490.1.S1_s_at BU877513 hypothetical protein - 7e-12 At3g01120 MTO1 (METHIONINE OVERACCUMULATION 1) O.I. H.G. S.X.
0.32 55.2 0.93 PtpAffx.4733.4.A1_at CA929336 cytochrome P450 probable obtusifoliol 14-alpha-demethylase - 2e-38 At1g11680 CYP51G1 (CYTOCHROME P450 51G1) O.I. H.G. S.X.
0.29 50.5 0.94 PtpAffx.135263.1.S1_s_at BU823432 hypothetical protein - 2e-1 At2g29300 tropinone reductase, putative / tropine dehydrogenase, putative O.I. H.G. S.X.
0.22 38.3 0.93 PtpAffx.8929.1.A1_s_at DN485457 hypothetical protein - 3e-24 At3g53580 diaminopimelate epimerase family protein O.I. H.G. S.X.
0.22 38.3 0.93 PtpAffx.214474.1.S1_at pmrna28150 hypothetical protein - 1e-6 At5g58005 unknown protein O.I. H.G. S.X.
0.17 29.1 0.93 Ptp.2654.1.S1_s_at CV244756 hypothetical protein - 1e-79 At3g01120 MTO1 (METHIONINE OVERACCUMULATION 1) O.I. H.G. S.X.
0.13 21.6 0.92 PtpAffx.90648.1.A1_at BU886954 hypothetical protein - 9e-18 At4g30060 unknown protein O.I. H.G. S.X.
0.12 19.6 0.92 PtpAffx.31792.1.S1_at CX178771 hypothetical protein - 2e+0 At3g62420 ATBZIP53 (BASIC REGION/LEUCINE ZIPPER MOTIF 53) O.I. H.G. S.X.
0.11 18.1 0.92 PtpAffx.46061.1.S1_at CF230731 - - 5e-9 At1g78580 ATTPS1 (TREHALOSE-6-PHOSPHATE SYNTHASE) O.I. H.G. S.X.
0.07 11.6 0.92 PtpAffx.11032.1.S1_at CV283925 hypothetical protein - 8e-71 At3g55440 TPI (TRIOSEPHOSPHATE ISOMERASE) O.I. H.G. S.X.
0.07 11.6 0.91 PtpAffx.13176.7.A1_a_at CV260070 - - 2e-2 At2g23080 casein kinase II alpha chain, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.1 95.5 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM327380 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM327398 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM327403 Populus balsamifera_20071015_Etiolated_seedling_6d_3 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM362890 Clone1979_LPI5_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3 89.8 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM327402 Populus balsamifera_20071015_Etiolated_seedling_6d_2 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM327397 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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