Co-expression analysis

Gene ID	PtpAffx.25868.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g56900: aladin-related / adracalin-related (HF=1e-20)
Module size	7 genes
NF	0.50
%ile	80.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	73.7	0.96	PtpAffx.25868.1.S1_at	CX656578	-	-	1e-20	At3g56900	aladin-related / adracalin-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.96	PtpAffx.103673.1.A1_at	CK096538	-	-	1e+0	At5g57750	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.97	PtpAffx.1770.11.A1_a_at	CV246042	-	-	2e-36	At2g29560	enolase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.96	PtpAffx.207308.1.S1_at	pmrna14490	hypothetical protein	-	3e-109	At2g23520	catalytic/ pyridoxal phosphate binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.97	PtpAffx.151685.1.A1_at	DN485825	hypothetical protein	-	2e-1	At3g14280	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.97	Ptp.4755.1.S1_at	BU895769	hypothetical protein	-	4e-1	At1g14450	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.97	PtpAffx.124592.1.S1_s_at	DN496233	hypothetical protein	-	2e+0	At5g40500	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.2	98.1	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.7	96.3	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.0	88.0	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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