Co-expression analysis

Gene ID	PtpAffx.25638.2.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g17310: unknown protein (HF=3e-10)
Module size	7 genes
NF	0.27
%ile	47.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.43	69.7	0.92	PtpAffx.25638.2.S1_at	CK102898	hypothetical protein	-	3e-10	At4g17310	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.94	Ptp.1890.1.S1_at	CV263640	hypothetical protein	-	1e-163	At3g13920	EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.96	Ptp.2051.1.S1_at	CV243394	hypothetical protein	-	2e-16	At2g39990	EIF2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.96	PtpAffx.17919.2.A1_at	CV275513	-	-	4e-26	At3g04770	RPSAb (40S ribosomal protein SA B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.96	PtpAffx.17919.2.A1_x_at	CV275513	-	-	4e-26	At3g04770	RPSAb (40S ribosomal protein SA B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	0.94	Ptp.2710.1.S1_s_at	BU865876	hypothetical protein	-	2e-14	At3g06700	60S ribosomal protein L29 (RPL29A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.93	PtpAffx.90967.2.S1_s_at	CA821599	hypothetical protein	-	5e-6	At3g49460	60S acidic ribosomal protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.0	98.7	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.0	97.5	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.0	96.6	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage