Co-expression analysis

Gene ID	PtpAffx.25548.2.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g08780: peroxidase, putative (HF=2e-4)
Module size	27 genes
NF	0.36
%ile	61.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.85	PtpAffx.25548.2.S1_at	D30653.1	hypothetical protein	-	2e-4	At4g08780	peroxidase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.62	87.2	0.88	PtpAffx.25548.2.S1_x_at	D30653.1	hypothetical protein	-	2e-4	At4g08780	peroxidase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	0.90	PtpAffx.26325.1.A1_at	CK093676	hypothetical protein	-	3e-8	At5g07800	flavin-containing monooxygenase family protein / FMO family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.92	PtpAffx.213067.1.S1_s_at	pmrna25571	hypothetical protein	-	1e-2	At5g17700	MATE efflux family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.51	78.9	0.89	Ptp.3916.1.S1_at	DN488777	hypothetical protein	-	5e-1	At5g58770	dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.88	Ptp.7469.1.S1_at	DN489622	-	-	9e-9	At5g16990	NADP-dependent oxidoreductase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.89	Ptp.6198.1.S1_s_at	DN500506	-	-	4e+0	At5g52150	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.87	PtpAffx.218352.1.S1_at	pmrna33931	hypothetical protein	-	8e-40	At5g53450	ORG1 (OBP3-responsive gene 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.90	Ptp.3590.1.A1_s_at	CV270210	hypothetical protein	-	3e-2	At3g43110	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.89	PtpAffx.215225.1.S1_at	pmrna29288	hypothetical protein	-	1e-1	At4g29170	ATMND1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.89	PtpAffx.207730.1.S1_at	pmrna15363	hypothetical protein	-	9e-1	At2g11570	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.93	Ptp.5267.1.S1_s_at	AI165334	hypothetical protein	-	9e-1	At4g31196	electron carrier/ oxidoreductase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.94	PtpAffx.110954.2.S1_at	DN486172	AP2/ERF domain-containing transcription factor	-	4e-7	At3g23230	ethylene-responsive factor, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.87	PtpAffx.203421.1.S1_at	pmrna6813	hypothetical protein	-	6e+0	At5g45940	atnudt11 (Arabidopsis thaliana Nudix hydrolase homolog 11)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.93	PtpAffx.202568.1.S1_at	pmrna5151	hypothetical protein	-	2e-1	At1g35400	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.91	PtpAffx.95783.1.A1_at	CV232900	hypothetical protein	-	9e-5	At1g73740	glycosyl transferase family 28 protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.94	PtpAffx.213267.1.S1_at	pmrna25950	hypothetical protein	-	4e-2	At2g28580	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.87	Ptp.1142.1.S1_at	CK090292	hypothetical protein	-	4e+0	At4g09000	14-3-3-like protein GF14 chi / general regulatory factor 1 (GRF1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.91	Ptp.5267.1.S1_at	AI165334	hypothetical protein	-	9e-1	At4g31196	electron carrier/ oxidoreductase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	0.93	PtpAffx.2390.3.A1_at	CK097146	hypothetical protein	-	5e+0	At4g10100	CNX7	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.87	PtpAffx.203421.1.S1_x_at	pmrna6813	hypothetical protein	-	6e+0	At5g45940	atnudt11 (Arabidopsis thaliana Nudix hydrolase homolog 11)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.87	Ptp.2915.1.S1_at	DN496177	hypothetical protein	-	6e+0	At5g47870	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.93	PtpAffx.20342.1.A1_at	CK089631	-	-	5e+0	Atcg00070	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.91	Ptp.2971.2.A1_at	DN488746	hypothetical protein	-	1e-2	At1g22700	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.90	PtpAffx.210964.1.S1_at	pmrna21540	hypothetical protein	-	2e-26	At5g27950	kinesin motor protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.90	Ptp.3226.1.S1_s_at	DN496211	hypothetical protein	-	5e-2	At1g01970	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.92	Ptp.7529.1.S1_at	DN495630	hypothetical protein	-	1e-45	At3g28460	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	94.0	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.0	88.0	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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