Co-expression analysis

Gene ID PtpAffx.2548.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At1g76690: OPR2 (HF=4e-12)
Module size 7 genes
NF 0.47
%ile 77.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.87PtpAffx.2548.1.A1_atCV259452--4e-12At1g76690OPR2O.I.H.G.S.X.
0.6086.00.89PtpAffx.140744.1.A1_atCV246726--8e-1At5g07880SNAP29O.I.H.G.S.X.
0.5078.60.88PtpAffx.140952.1.A1_atCV238430--1e+0At5g22710-O.I.H.G.S.X.
0.4067.00.89PtpAffx.89304.1.A1_atCV229973global transcription factor group-1e-3At5g46030unknown proteinO.I.H.G.S.X.
0.4067.00.91PtpAffx.200320.1.S1_atpmrna636hypothetical protein-1e-16At1g31320LBD4 (LOB DOMAIN-CONTAINING PROTEIN 4)O.I.H.G.S.X.
0.3661.60.89PtpAffx.52660.1.S1_a_atBU893589hypothetical protein-8e-2At2g37870protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.2950.50.89PtpAffx.96558.1.A1_atCV258453SAUR family protein-2e+0At2g34390NIP2O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.998.9GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
7.798.3GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.796.3GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.088.0GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.088.0GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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