Co-expression analysis

Gene ID	PtpAffx.2543.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g04190: tetratricopeptide repeat (TPR)-containing protein (HF=8e-10)
Module size	6 genes
NF	0.38
%ile	65.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.97	PtpAffx.2543.1.S1_at	DN490912	hypothetical protein	-	8e-10	At1g04190	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.97	Ptp.67.1.S1_at	CV247130	-	-	1e-33	At5g51700	PBS2 (PPHB SUSCEPTIBLE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.97	Ptp.1743.1.A1_a_at	CV271562	hypothetical protein	-	3e-45	At4g26300	emb1027 (embryo defective 1027)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.97	Ptp.2290.1.S1_x_at	CV278722	hypothetical protein	-	6e-28	At1g09590	60S ribosomal protein L21 (RPL21A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.97	Ptp.4240.2.A1_a_at	CA927596	hypothetical protein	-	2e-27	At3g18880	ribosomal protein S17 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.97	Ptp.5276.1.S1_s_at	CV268936	hypothetical protein	-	1e-25	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.4	97.7	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.3	96.9	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.8	92.1	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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