Co-expression analysis

Gene ID PtpAffx.2542.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g47870: unknown protein (HF=9e-31)
Module size 6 genes
NF 0.18
%ile 34.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5380.50.92PtpAffx.2542.1.S1_atCV255768--9e-31At5g47870unknown proteinO.I.H.G.S.X.
0.4471.90.92PtpAffx.10616.2.S1_a_atCV270910hypothetical protein-3e-43At2g42910ribose-phosphate pyrophosphokinase 4 / phosphoribosyl diphosphate synthetase 4 (PRS4)O.I.H.G.S.X.
0.4471.90.92PtpAffx.31526.1.A1_atCV231954hypothetical protein-6e-2At4g31860protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.1321.60.93PtpAffx.52208.2.A1_a_atCV272283hypothetical protein-1e-3At1g72550tRNA synthetase beta subunit family proteinO.I.H.G.S.X.
0.0914.60.93Ptp.62.1.A1_s_atCK096214hypothetical protein-4e-1At3g55646unknown proteinO.I.H.G.S.X.
0.0812.90.93PtpAffx.150562.1.S1_atCV270374hypothetical protein-2e-5At5g49540unknown proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.3863.70.90PtpAffx.5227.1.A1_atCV269200glutaredoxin S15-2e+0At5g39470F-box family proteinO.I.H.G.S.X.
0.3255.20.91PtpAffx.37010.1.A1_atCV231839hypothetical protein-4e-16At1g72710CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2)O.I.H.G.S.X.
0.2340.50.93Ptp.5415.1.S1_a_atCK099666hypothetical protein-9e-26At1g61700DNA-directed RNA polymerase II, putative (RPB10)O.I.H.G.S.X.
0.2238.30.91PtpAffx.164039.1.S1_atBP931187hypothetical protein-8e-10At5g58490cinnamoyl-CoA reductase familyO.I.H.G.S.X.
0.1932.70.90Ptp.5854.1.S1_x_atCV260366hypothetical protein-7e-99At5g4577560S ribosomal protein L11 (RPL11D)O.I.H.G.S.X.
0.1932.70.92PtpAffx.8698.1.A1_atCV268649--5e-1At2g35950EDA12 (embryo sac development arrest 12)O.I.H.G.S.X.
0.1729.10.92PtpAffx.16316.2.S1_atCV230825--4e-1At1g16020unknown proteinO.I.H.G.S.X.
0.1729.10.90PtpAffx.95043.1.A1_atCV262008hypothetical protein-4e+0At3g11090LBD21 (LOB DOMAIN-CONTAINING PROTEIN 21)O.I.H.G.S.X.
0.1729.10.90PtpAffx.94833.1.A1_atCV269374hypothetical protein-2e-27At5g46210CUL4 (CULLIN4)O.I.H.G.S.X.
0.1525.30.87PtpAffx.127302.2.A1_atCV262934--3e+0At5g08535D111/G-patch domain-containing proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.797.9GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
5.196.8GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.196.8GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
4.996.5GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.596.1GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327402Populus balsamifera_20071015_Etiolated_seedling_6d_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327380Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327403Populus balsamifera_20071015_Etiolated_seedling_6d_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage