CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.2542.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g47870: unknown protein (HF=9e-31)

Module size 6 genes

NF 0.18

%ile 34.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 80.5 0.92 PtpAffx.2542.1.S1_at CV255768 - - 9e-31 At5g47870 unknown protein O.I. H.G. S.X.
0.44 71.9 0.92 PtpAffx.10616.2.S1_a_at CV270910 hypothetical protein - 3e-43 At2g42910 ribose-phosphate pyrophosphokinase 4 / phosphoribosyl diphosphate synthetase 4 (PRS4) O.I. H.G. S.X.
0.44 71.9 0.92 PtpAffx.31526.1.A1_at CV231954 hypothetical protein - 6e-2 At4g31860 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.13 21.6 0.93 PtpAffx.52208.2.A1_a_at CV272283 hypothetical protein - 1e-3 At1g72550 tRNA synthetase beta subunit family protein O.I. H.G. S.X.
0.09 14.6 0.93 Ptp.62.1.A1_s_at CK096214 hypothetical protein - 4e-1 At3g55646 unknown protein O.I. H.G. S.X.
0.08 12.9 0.93 PtpAffx.150562.1.S1_at CV270374 hypothetical protein - 2e-5 At5g49540 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.38	63.7	0.90	PtpAffx.5227.1.A1_at	CV269200	glutaredoxin S15	-	2e+0	At5g39470	F-box family protein	O.I.	H.G.	S.X.
0.32	55.2	0.91	PtpAffx.37010.1.A1_at	CV231839	hypothetical protein	-	4e-16	At1g72710	CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2)	O.I.	H.G.	S.X.
0.23	40.5	0.93	Ptp.5415.1.S1_a_at	CK099666	hypothetical protein	-	9e-26	At1g61700	DNA-directed RNA polymerase II, putative (RPB10)	O.I.	H.G.	S.X.
0.22	38.3	0.91	PtpAffx.164039.1.S1_at	BP931187	hypothetical protein	-	8e-10	At5g58490	cinnamoyl-CoA reductase family	O.I.	H.G.	S.X.
0.19	32.7	0.90	Ptp.5854.1.S1_x_at	CV260366	hypothetical protein	-	7e-99	At5g45775	60S ribosomal protein L11 (RPL11D)	O.I.	H.G.	S.X.
0.19	32.7	0.92	PtpAffx.8698.1.A1_at	CV268649	-	-	5e-1	At2g35950	EDA12 (embryo sac development arrest 12)	O.I.	H.G.	S.X.
0.17	29.1	0.92	PtpAffx.16316.2.S1_at	CV230825	-	-	4e-1	At1g16020	unknown protein	O.I.	H.G.	S.X.
0.17	29.1	0.90	PtpAffx.95043.1.A1_at	CV262008	hypothetical protein	-	4e+0	At3g11090	LBD21 (LOB DOMAIN-CONTAINING PROTEIN 21)	O.I.	H.G.	S.X.
0.17	29.1	0.90	PtpAffx.94833.1.A1_at	CV269374	hypothetical protein	-	2e-27	At5g46210	CUL4 (CULLIN4)	O.I.	H.G.	S.X.
0.15	25.3	0.87	PtpAffx.127302.2.A1_at	CV262934	-	-	3e+0	At5g08535	D111/G-patch domain-containing protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.7 97.9 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.1 96.8 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.1 96.8 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.9 96.5 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.5 96.1 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM327402 Populus balsamifera_20071015_Etiolated_seedling_6d_2 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM327380 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM327403 Populus balsamifera_20071015_Etiolated_seedling_6d_3 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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