Co-expression analysis

Gene ID PtpAffx.2542.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g47870: unknown protein (HF=9e-31)
Module size 6 genes
NF 0.18
%ile 34.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5380.50.92PtpAffx.2542.1.S1_atCV255768--9e-31At5g47870unknown proteinO.I.H.G.S.X.
0.4471.90.92PtpAffx.10616.2.S1_a_atCV270910hypothetical protein-3e-43At2g42910ribose-phosphate pyrophosphokinase 4 / phosphoribosyl diphosphate synthetase 4 (PRS4)O.I.H.G.S.X.
0.4471.90.92PtpAffx.31526.1.A1_atCV231954hypothetical protein-6e-2At4g31860protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.1321.60.93PtpAffx.52208.2.A1_a_atCV272283hypothetical protein-1e-3At1g72550tRNA synthetase beta subunit family proteinO.I.H.G.S.X.
0.0914.60.93Ptp.62.1.A1_s_atCK096214hypothetical protein-4e-1At3g55646unknown proteinO.I.H.G.S.X.
0.0812.90.93PtpAffx.150562.1.S1_atCV270374hypothetical protein-2e-5At5g49540unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.797.9GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
5.196.8GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.196.8GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
4.996.5GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.596.1GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327402Populus balsamifera_20071015_Etiolated_seedling_6d_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327380Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327403Populus balsamifera_20071015_Etiolated_seedling_6d_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os03g0851500, orthologous to the query gene, PtpAffx.2542.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8395.8Os03g0851500At5g47870-Conserved hypothetical protein1e-1At3g15700disease resistance protein, putativeO.I.H.G.S.X.
0.4458.1Os01g0844400At5g47870-Zn-finger, DHHC type domain containing protein1e-8At3g09320zinc finger (DHHC type) family proteinO.I.H.G.S.X.
0.4355.4Os01g0615200At5g47870-Transferase family protein1e+1At5g41590unknown proteinO.I.H.G.S.X.
0.4051.1Os11g0546100At5g47870-Lung seven transmembrane receptor family protein2e-2At2g01070-O.I.H.G.S.X.
0.052.5Os12g0566300At5g47870-ATP citrate lyase beta (Fragment)2e-66At1g09430ACLA-3O.I.H.G.S.X.
0.021.0Os05g0107700At5g47870-Transcription initiation factor IIA gamma chain(TFIIA-gamma)4e-26At4g24440transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays



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