Co-expression analysis

Gene ID PtpAffx.2542.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g47870: unknown protein (HF=9e-31)
Module size 6 genes
NF 0.18
%ile 34.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5380.50.92PtpAffx.2542.1.S1_atCV255768--9e-31At5g47870unknown proteinO.I.H.G.S.X.
0.4471.90.92PtpAffx.10616.2.S1_a_atCV270910hypothetical protein-3e-43At2g42910ribose-phosphate pyrophosphokinase 4 / phosphoribosyl diphosphate synthetase 4 (PRS4)O.I.H.G.S.X.
0.4471.90.92PtpAffx.31526.1.A1_atCV231954hypothetical protein-6e-2At4g31860protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.1321.60.93PtpAffx.52208.2.A1_a_atCV272283hypothetical protein-1e-3At1g72550tRNA synthetase beta subunit family proteinO.I.H.G.S.X.
0.0914.60.93Ptp.62.1.A1_s_atCK096214hypothetical protein-4e-1At3g55646unknown proteinO.I.H.G.S.X.
0.0812.90.93PtpAffx.150562.1.S1_atCV270374hypothetical protein-2e-5At5g49540unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.797.9GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
5.196.8GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.196.8GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
4.996.5GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.596.1GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327402Populus balsamifera_20071015_Etiolated_seedling_6d_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327380Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327403Populus balsamifera_20071015_Etiolated_seedling_6d_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig9095_at, orthologous to the query gene, PtpAffx.2542.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6784.7Contig9095_atAt5g47870--2e+0At1g29380-O.I.H.G.S.X.
0.4762.2Contig9853_atAt5g47870--3e+0At5g12140ATCYS1 (A. thaliana cystatin-1)O.I.H.G.S.X.
0.3342.6rbags15n22_atAt5g47870--1e+0At1g63270ATNAP10O.I.H.G.S.X.
0.2528.9Contig7535_atAt5g47870--3e-2At4g35600CONNEXIN 32O.I.H.G.S.X.
0.2528.9Contig5768_atAt5g47870--2e-7At1g09130ATP-dependent Clp protease proteolytic subunit, putativeO.I.H.G.S.X.
0.1412.9Contig4647_atAt5g47870--3e-3At2g37990ribosome biogenesis regulatory protein (RRS1) family proteinO.I.H.G.S.X.
0.1311.6Contig4927_s_atAt5g47870--4e-1At1g16880uridylyltransferase-relatedO.I.H.G.S.X.
0.1210.4Contig2343_s_atAt5g47870--1e+0At5g26010catalytic/ protein serine/threonine phosphataseO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage