CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.2542.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g47870: unknown protein (HF=9e-31)

Module size 6 genes

NF 0.18

%ile 34.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 80.5 0.92 PtpAffx.2542.1.S1_at CV255768 - - 9e-31 At5g47870 unknown protein O.I. H.G. S.X.
0.44 71.9 0.92 PtpAffx.10616.2.S1_a_at CV270910 hypothetical protein - 3e-43 At2g42910 ribose-phosphate pyrophosphokinase 4 / phosphoribosyl diphosphate synthetase 4 (PRS4) O.I. H.G. S.X.
0.44 71.9 0.92 PtpAffx.31526.1.A1_at CV231954 hypothetical protein - 6e-2 At4g31860 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.13 21.6 0.93 PtpAffx.52208.2.A1_a_at CV272283 hypothetical protein - 1e-3 At1g72550 tRNA synthetase beta subunit family protein O.I. H.G. S.X.
0.09 14.6 0.93 Ptp.62.1.A1_s_at CK096214 hypothetical protein - 4e-1 At3g55646 unknown protein O.I. H.G. S.X.
0.08 12.9 0.93 PtpAffx.150562.1.S1_at CV270374 hypothetical protein - 2e-5 At5g49540 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.7 97.9 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.1 96.8 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.1 96.8 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.9 96.5 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.5 96.1 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM327402 Populus balsamifera_20071015_Etiolated_seedling_6d_2 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM327380 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM327403 Populus balsamifera_20071015_Etiolated_seedling_6d_3 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the barley gene, Contig9095_at, orthologous to the query gene, PtpAffx.2542.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 84.7 Contig9095_at At5g47870 - - 2e+0 At1g29380 - O.I. H.G. S.X.
0.47 62.2 Contig9853_at At5g47870 - - 3e+0 At5g12140 ATCYS1 (A. thaliana cystatin-1) O.I. H.G. S.X.
0.33 42.6 rbags15n22_at At5g47870 - - 1e+0 At1g63270 ATNAP10 O.I. H.G. S.X.
0.25 28.9 Contig7535_at At5g47870 - - 3e-2 At4g35600 CONNEXIN 32 O.I. H.G. S.X.
0.25 28.9 Contig5768_at At5g47870 - - 2e-7 At1g09130 ATP-dependent Clp protease proteolytic subunit, putative O.I. H.G. S.X.
0.14 12.9 Contig4647_at At5g47870 - - 3e-3 At2g37990 ribosome biogenesis regulatory protein (RRS1) family protein O.I. H.G. S.X.
0.13 11.6 Contig4927_s_at At5g47870 - - 4e-1 At1g16880 uridylyltransferase-related O.I. H.G. S.X.
0.12 10.4 Contig2343_s_at At5g47870 - - 1e+0 At5g26010 catalytic/ protein serine/threonine phosphatase O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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