Co-expression analysis

Gene ID PtpAffx.25004.4.S1_a_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g01870: lipid transfer protein, putative (HF=1e-3)
Module size 6 genes
NF 0.32
%ile 55.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5683.90.92PtpAffx.25004.4.S1_a_atCV237911hypothetical protein-1e-3At5g01870lipid transfer protein, putativeO.I.H.G.S.X.
0.4067.00.90PtpAffx.206091.1.S1_atpmrna12066hypothetical protein-5e-13At3g10185-O.I.H.G.S.X.
0.3863.70.89PtpAffx.69240.1.A1_s_atCV264990hypothetical protein-5e-1At2g30860ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)O.I.H.G.S.X.
0.3559.70.89PtpAffx.4493.1.A1_x_atCV237113hypothetical protein-6e-1At2g10940protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.2543.60.90PtpAffx.98425.1.S1_atBU875119hypothetical protein-2e-5At4g25640MATE efflux family proteinO.I.H.G.S.X.
0.1118.10.90PtpAffx.224516.1.S1_s_atpmrna43133hypothetical protein-2e-9At1g22640MYB3 (MYB DOMAIN PROTEIN 3)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.099.1GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
10.098.9GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
4.796.3GSM327406Populus balsamifera_1006_young_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.596.1GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.088.0GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.987.2GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.886.4GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.886.4GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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