Co-expression analysis

Gene ID	PtpAffx.249.66.A1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g33040: ATP synthase gamma chain, mitochondrial (ATPC) (HF=2e-52)
Module size	9 genes
NF	0.69
%ile	95.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.74	93.8	0.96	PtpAffx.249.66.A1_s_at	CV227553	hypothetical protein	-	2e-52	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.89	97.8	0.97	PtpAffx.14196.1.S1_s_at	CV251866	hypothetical protein	-	4e-4	At1g72020	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.82	96.3	0.97	PtpAffx.13016.1.S1_s_at	CV273742	hypothetical protein	-	2e-46	At1g09330	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	0.97	PtpAffx.11912.1.S1_at	CV247192	hypothetical protein	-	2e-34	At3g07680	emp24/gp25L/p24 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.96	Ptp.746.1.A1_at	CV251238	hypothetical protein	-	3e-2	At2g16595	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.97	PtpAffx.4942.2.S1_s_at	CV236355	hypothetical protein	-	1e-11	At2g21160	translocon-associated protein alpha (TRAP alpha) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.64	88.4	0.96	PtpAffx.450.1.S1_at	CK318302	hypothetical protein	-	2e-72	At5g50850	MAB1 (MACCI-BOU)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.54	80.8	0.96	PtpAffx.936.1.S1_s_at	AF121194.2	hypothetical protein	-	2e-50	At1g78300	GRF2 (GENERAL REGULATORY FACTOR 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.97	Ptp.2351.1.S1_s_at	CF936500	hypothetical protein	-	2e-6	At4g30010	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	94.7	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.9	92.5	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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