Co-expression analysis

Gene ID	PtpAffx.249.47.A1_s_at
Gene name
Homology with Arabidopsis	Similar to At4g11650: ATOSM34 (osmotin 34) (HF=1e-3)
Module size	6 genes
NF	0.37
%ile	63.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	82.2	0.91	PtpAffx.249.47.A1_s_at	CV256610	-	-	1e-3	At4g11650	ATOSM34 (osmotin 34)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.90	PtpAffx.9992.1.S1_at	CV280429	hypothetical protein	-	6e-4	At5g09440	EXL4 (EXORDIUM LIKE 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.91	PtpAffx.6058.1.S1_s_at	BU880130	hypothetical protein	-	1e-103	At5g57655	xylose isomerase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.90	Ptp.6120.1.S1_at	CV240779	hypothetical protein	-	6e-9	At3g15580	APG8H (AUTOPHAGY 8H)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.91	Ptp.4661.1.S1_s_at	CV256788	hypothetical protein	-	1e-19	At5g54500	FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.91	PtpAffx.1025.12.S1_at	BU882243	hypothetical protein	-	1e-19	At5g40760	G6PD6 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.9	92.5	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.2	89.3	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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