Co-expression analysis

Gene ID PtpAffx.249.353.A1_at
Gene name
Homology with ArabidopsisSimilar to At2g04070: antiporter/ drug transporter/ transporter (HF=5e-1)
Module size 6 genes
NF 0.34
%ile 59.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7393.60.87PtpAffx.249.353.A1_atCV273034--5e-1At2g04070antiporter/ drug transporter/ transporterO.I.H.G.S.X.
0.5078.60.89PtpAffx.219499.1.S1_x_atpmrna35438hypothetical protein-4e+0At5g06280unknown proteinO.I.H.G.S.X.
0.3255.20.85PtpAffx.147163.1.A1_atCV267314hypothetical protein-4e-1At4g23260ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseO.I.H.G.S.X.
0.3153.70.85PtpAffx.95180.1.S1_atCA824276--2e-2At1g26740structural constituent of ribosomeO.I.H.G.S.X.
0.2747.10.87PtpAffx.125515.1.S1_atCX173846--8e+0At4g16410unknown proteinO.I.H.G.S.X.
0.1626.90.87PtpAffx.219499.1.S1_atpmrna35438hypothetical protein-4e+0At5g06280unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.197.6GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.195.5GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.794.7GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.389.8GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.088.0GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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