Co-expression analysis

Gene ID	PtpAffx.249.169.A1_a_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g42030: ABIL4 (ABL INTERACTOR-LIKE PROTEIN 4) (HF=1e+0)
Module size	6 genes
NF	0.46
%ile	76.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.91	PtpAffx.249.169.A1_a_at	CV260069	hypothetical protein	-	1e+0	At5g42030	ABIL4 (ABL INTERACTOR-LIKE PROTEIN 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.91	PtpAffx.225604.1.S1_at	pmrna45061	tir-nbs-lrr resistance protein	-	7e-9	At3g59780	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.92	PtpAffx.211534.1.S1_at	pmrna22601	hypothetical protein	-	3e+0	At5g44940	F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.92	Ptp.1489.2.S1_s_at	CF229570	hypothetical protein	-	2e-2	At3g60080	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.91	PtpAffx.225099.1.S1_at	pmrna44197	hypothetical protein	-	3e-109	At4g30020	subtilase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.91	PtpAffx.72170.1.A1_at	AJ774608	hypothetical protein	-	4e-1	At3g23600	dienelactone hydrolase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.6	97.2	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.3	93.7	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.0	92.9	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.0	92.9	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.7	91.8	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.2	89.3	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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