Co-expression analysis

Gene ID	PtpAffx.249.158.S1_a_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g20150: unknown protein (HF=9e-23)
Module size	6 genes
NF	0.48
%ile	78.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.96	PtpAffx.249.158.S1_a_at	CV234195	hypothetical protein	-	9e-23	At4g20150	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	PtpAffx.38755.1.A1_at	CV260007	hypothetical protein	-	7e-21	At3g49870	ATARLA1C (ADP-ribosylation factor-like A1C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.96	Ptp.2022.1.S1_s_at	CV258781	hypothetical protein	-	9e-6	At5g14240	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.96	PtpAffx.59972.2.S1_a_at	CX169696	hypothetical protein	-	2e-9	At1g48160	signal recognition particle 19 kDa protein, putative / SRP19, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.97	PtpAffx.159533.1.A1_at	CV269395	hypothetical protein	-	2e-15	At2g32080	PUR ALPHA-1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.96	PtpAffx.13315.1.S1_at	CX173115	-	-	1e+0	At2g18000	TAF14 (TBP-associated factor 14)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.5	97.1	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.3	95.8	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.3	89.8	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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