Co-expression analysis

Gene ID	PtpAffx.249.113.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g23140: NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7) (HF=6e+0)
Module size	6 genes
NF	0.61
%ile	91.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	71.9	0.94	PtpAffx.249.113.S1_at	CV280925	hypothetical protein	-	6e+0	At5g23140	NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.94	PtpAffx.3707.1.S1_s_at	BP933241	hypothetical protein	-	4e-2	At2g19590	ACO1 (ACC OXIDASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.95	Ptp.4062.1.A1_at	CV245827	hypothetical protein	-	4e-2	At4g24805	methyltransferase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.95	PtpAffx.3707.2.S1_s_at	CV268421	-	-	2e+0	At1g15190	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.94	PtpAffx.19246.1.S1_at	CV245825	hypothetical protein	-	2e-32	At2g35940	BLH1 (BEL1-LIKE HOMEODOMAIN 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.94	PtpAffx.204923.1.S1_x_at	pmrna9738	hypothetical protein	-	4e-12	At5g01180	PTR5 (PEPTIDE TRANSPORTER 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.8	97.4	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.1	93.2	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.9	92.5	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6	91.3	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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