Co-expression analysis

Gene ID	PtpAffx.24700.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g13940: MEE58 (MATERNAL EFFECT EMBRYO ARREST 58) (HF=8e-2)
Module size	7 genes
NF	0.26
%ile	46.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	82.2	0.92	PtpAffx.24700.1.A1_at	CV249721	hypothetical protein	-	8e-2	At4g13940	MEE58 (MATERNAL EFFECT EMBRYO ARREST 58)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.93	PtpAffx.114566.1.A1_at	CV254112	hypothetical protein	-	2e-1	At2g17710	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.93	PtpAffx.7042.1.S1_at	BI123470	-	-	2e+0	At5g40382	cytochrome-c oxidase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.93	PtpAffx.217755.1.S1_at	pmrna33144	hypothetical protein	-	6e+0	At2g06530	VPS2.1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.93	PtpAffx.202936.1.S1_x_at	pmrna5810	hypothetical protein	-	1e-47	At1g79930	HSP91	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.92	PtpAffx.5021.1.S1_at	CK090757	hypothetical protein	-	1e-4	At1g54360	TAF6B4 (TBP-ASSOCIATED FACTOR 6B4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.92	PtpAffx.45958.1.A1_at	DN492279	hypothetical protein	-	7e-55	At1g02410	cytochrome c oxidase assembly protein CtaG / Cox11 family	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.7	96.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.2	95.6	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.1	95.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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