Co-expression analysis

Gene ID	PtpAffx.24507.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g27470: zinc finger (C3HC4-type RING finger) family protein (HF=1e-7)
Module size	11 genes
NF	0.42
%ile	70.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	84.9	0.94	PtpAffx.24507.1.A1_at	CV268439	hypothetical protein	-	1e-7	At4g27470	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.70	91.7	0.94	PtpAffx.40412.1.S1_at	CV242124	hypothetical protein	-	8e+0	At5g64810	WRKY51	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.64	88.4	0.94	PtpAffx.137458.1.S1_at	CV258197	hypothetical protein	-	2e-18	At1g67600	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	0.94	Ptp.4502.1.S1_at	CN523586	hypothetical protein	-	7e-53	At2g44350	ATCS	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.96	PtpAffx.56923.1.S1_at	BI123150	hypothetical protein	-	2e-77	At3g24090	glutamine-fructose-6-phosphate transaminase (isomerizing)/ sugar binding / transaminase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.94	PtpAffx.37463.1.A1_at	CV255927	-	-	2e-12	At2g02040	PTR2 (PEPTIDE TRANSPORTER 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.96	PtpAffx.454.7.A1_s_at	CV281713	hypothetical protein	-	2e-100	At3g56800	CAM3 (CALMODULIN 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	0.94	Ptp.348.1.S1_at	CV268169	hypothetical protein	-	2e+0	At1g31320	LBD4 (LOB DOMAIN-CONTAINING PROTEIN 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.94	Ptp.7355.1.S1_s_at	CX174270	hypothetical protein	-	3e-24	At1g01710	acyl-CoA thioesterase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	0.93	PtpAffx.11524.3.S1_at	CV272635	hypothetical protein	-	4e-28	At5g23250	succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.94	PtpAffx.450.5.A1_at	CV278124	hypothetical protein	-	2e-56	At5g50850	MAB1 (MACCI-BOU)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.3	97.7	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.7	96.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.4	95.9	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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