Co-expression analysis

Gene ID PtpAffx.24507.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g27470: zinc finger (C3HC4-type RING finger) family protein (HF=1e-7)
Module size 11 genes
NF 0.42
%ile 70.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5984.90.94PtpAffx.24507.1.A1_atCV268439hypothetical protein-1e-7At4g27470zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.7091.70.94PtpAffx.40412.1.S1_atCV242124hypothetical protein-8e+0At5g64810WRKY51O.I.H.G.S.X.
0.6488.40.94PtpAffx.137458.1.S1_atCV258197hypothetical protein-2e-18At1g67600-O.I.H.G.S.X.
0.5683.90.94Ptp.4502.1.S1_atCN523586hypothetical protein-7e-53At2g44350ATCSO.I.H.G.S.X.
0.4774.60.96PtpAffx.56923.1.S1_atBI123150hypothetical protein-2e-77At3g24090glutamine-fructose-6-phosphate transaminase (isomerizing)/ sugar binding / transaminaseO.I.H.G.S.X.
0.4774.60.94PtpAffx.37463.1.A1_atCV255927--2e-12At2g02040PTR2 (PEPTIDE TRANSPORTER 2)O.I.H.G.S.X.
0.3863.70.96PtpAffx.454.7.A1_s_atCV281713hypothetical protein-2e-100At3g56800CAM3 (CALMODULIN 3)O.I.H.G.S.X.
0.3762.30.94Ptp.348.1.S1_atCV268169hypothetical protein-2e+0At1g31320LBD4 (LOB DOMAIN-CONTAINING PROTEIN 4)O.I.H.G.S.X.
0.3153.70.94Ptp.7355.1.S1_s_atCX174270hypothetical protein-3e-24At1g01710acyl-CoA thioesterase family proteinO.I.H.G.S.X.
0.2850.50.93PtpAffx.11524.3.S1_atCV272635hypothetical protein-4e-28At5g23250succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putativeO.I.H.G.S.X.
0.2747.10.94PtpAffx.450.5.A1_atCV278124hypothetical protein-2e-56At5g50850MAB1 (MACCI-BOU)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.397.7GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.796.3GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.495.9GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.088.0GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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