Co-expression analysis

Gene ID PtpAffx.24353.1.A1_a_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g26250: proline-rich extensin, putative (HF=3e-1)
Module size 6 genes
NF 0.49
%ile 79.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7794.90.93PtpAffx.24353.1.A1_a_atCV274454hypothetical protein-3e-1At1g26250proline-rich extensin, putativeO.I.H.G.S.X.
0.6791.10.93PtpAffx.55461.1.S1_atDN503438--7e-3At3g09270ATGSTU8 (GLUTATHIONE S-TRANSFERASE TAU 8)O.I.H.G.S.X.
0.5078.60.94PtpAffx.117121.1.S1_s_atCX167944hypothetical protein-5e-3At4g02850phenazine biosynthesis PhzC/PhzF family proteinO.I.H.G.S.X.
0.4067.00.93PtpAffx.209212.1.S1_atpmrna18217hypothetical protein-2e-3At4g02850phenazine biosynthesis PhzC/PhzF family proteinO.I.H.G.S.X.
0.3357.50.93PtpAffx.89823.2.A1_a_atDN487789ABC transporter family, pleiotropic drug resistance protein-2e-11At1g15210PDR7 (PLEIOTROPIC DRUG RESISTANCE 7)O.I.H.G.S.X.
0.2238.30.93PtpAffx.85312.1.S1_atCV269394--2e-4At2g30140UDP-glucoronosyl/UDP-glucosyl transferase family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.798.6GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.897.4GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.797.3GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.597.1GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
5.096.6GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.796.3GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.495.9GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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