Co-expression analysis

Gene ID PtpAffx.24245.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g21500: 1-deoxy-D-xylulose-5-phosphate synthase (HF=5e-1)
Module size 18 genes
NF 0.29
%ile 51.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9499.60.85PtpAffx.24245.1.A1_atCV267867--5e-1At3g215001-deoxy-D-xylulose-5-phosphate synthaseO.I.H.G.S.X.
0.5078.60.94PtpAffx.214503.1.S1_atpmrna28205hypothetical protein-3e-5At2g31141unknown proteinO.I.H.G.S.X.
0.5078.60.95PtpAffx.205291.1.S1_atpmrna10493hypothetical protein-2e+0At3g26770short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.4268.60.93PtpAffx.213065.1.S1_atpmrna25567hypothetical protein-1e-30At4g00750dehydration-responsive family proteinO.I.H.G.S.X.
0.3863.70.94Ptp.4862.1.S1_s_atBU871535hypothetical protein-7e-89At3g27240cytochrome c1, putativeO.I.H.G.S.X.
0.3661.60.94PtpAffx.203852.1.S1_atpmrna7607hypothetical protein-1e-1At3g54620BZIP25 (BASIC LEUCINE ZIPPER 25)O.I.H.G.S.X.
0.3052.00.94PtpAffx.79508.1.S1_atDN492236hypothetical protein-4e-89At5g05920DHS (DEOXYHYPUSINE SYNTHASE)O.I.H.G.S.X.
0.2950.50.94PtpAffx.68287.1.S1_atCF228395--4e-53At5g19780TUA5O.I.H.G.S.X.
0.2950.50.93PtpAffx.152061.1.S1_atCK116361tubulin alpha-6 chain /// tubulin alpha-8 chain-6e-149At5g19780TUA5O.I.H.G.S.X.
0.2645.20.95PtpAffx.211320.1.S1_s_atpmrna22196f-box family protein-2e+0At4g10330glycine-rich proteinO.I.H.G.S.X.
0.2543.60.92PtpAffx.213378.1.S1_atpmrna26176hypothetical protein-1e-1At5g06380unknown proteinO.I.H.G.S.X.
0.2543.60.96PtpAffx.63341.1.S1_atCK318907hypothetical protein-8e-9At2g31140-O.I.H.G.S.X.
0.2340.50.96PtpAffx.108502.1.A1_atBI127008hypothetical protein-8e-30At3g48030hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2034.60.95Ptp.1593.1.A1_atCV234995hypothetical protein-5e-3At2g40710-O.I.H.G.S.X.
0.1830.80.94PtpAffx.101699.1.A1_a_atCV241536--2e-7At5g16120hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.
0.1423.50.96PtpAffx.113124.1.S1_atCN518991hypothetical protein /// f-box family protein-2e-8At2g32560F-box family proteinO.I.H.G.S.X.
0.1118.10.96PtpAffx.224220.1.S1_atpmrna42570hypothetical protein-1e-3At5g51750ATSBT1.3 (ARABIDOPSIS THALIANA SUBTILASE 1.3)O.I.H.G.S.X.
0.0711.60.96PtpAffx.14065.1.A1_a_atCV271725hypothetical protein-3e-18At4g24380unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.092.9GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.886.4GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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