Co-expression analysis

Gene ID PtpAffx.24127.2.A1_a_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g51000: epoxide hydrolase, putative (HF=6e-6)
Module size 6 genes
NF 0.35
%ile 61.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.94PtpAffx.24127.2.A1_a_atCV274197hypothetical protein-6e-6At3g51000epoxide hydrolase, putativeO.I.H.G.S.X.
0.7393.60.94PtpAffx.24127.1.S1_atCV256258hypothetical protein-6e-4At3g51000epoxide hydrolase, putativeO.I.H.G.S.X.
0.6791.10.95PtpAffx.158416.1.S1_atCV131381hypothetical protein-9e-24At5g63620oxidoreductase, zinc-binding dehydrogenase family proteinO.I.H.G.S.X.
0.3255.20.95PtpAffx.201765.1.S1_atpmrna3523NAC domain protein, IPR003441-2e-11At1g34190anac017 (Arabidopsis NAC domain containing protein 17)O.I.H.G.S.X.
0.3153.70.95PtpAffx.18489.1.A1_s_atCV245016hypothetical protein-5e-3At1g49050aspartyl protease family proteinO.I.H.G.S.X.
0.1321.60.95PtpAffx.22348.1.S1_atAI165753--1e-22At5g48380leucine-rich repeat family protein / protein kinase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.597.1GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
5.396.9GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.296.8GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
4.495.9GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
3.393.7GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.393.7GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.691.3GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.490.4GSM362883Clone1979_LPI2_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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