Co-expression analysis

Gene ID	PtpAffx.23842.1.S1_a_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g22920: zinc finger (C3HC4-type RING finger) family protein (HF=1e-27)
Module size	11 genes
NF	0.44
%ile	73.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	93.6	0.88	PtpAffx.23842.1.S1_a_at	CV265597	hypothetical protein	-	1e-27	At5g22920	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.92	PtpAffx.28796.1.S1_at	CV245075	hypothetical protein	-	5e-4	At2g38450	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.93	Ptp.5817.1.S1_at	AJ776993	hypothetical protein	-	3e-18	At3g48530	KING1 (SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.93	PtpAffx.30187.1.S1_at	CV264639	hypothetical protein	-	5e-7	At3g48530	KING1 (SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.90	PtpAffx.43752.1.A1_at	CK090625	hypothetical protein	-	1e-7	At1g78310	VQ motif-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.91	Ptp.3022.1.A1_s_at	CV274928	hypothetical protein	-	8e-43	At2g22800	HAT9	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	0.91	PtpAffx.118422.2.S1_a_at	CK091385	hypothetical protein	-	1e-19	At3g47160	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.92	PtpAffx.28796.1.S1_a_at	CV245075	hypothetical protein	-	5e-4	At2g38450	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.90	PtpAffx.139389.1.S1_at	CK115628	hypothetical protein	-	1e+0	At3g23220	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.92	PtpAffx.19734.2.A1_at	CV248852	-	-	1e+0	At5g26990	drought-responsive family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.94	PtpAffx.9525.1.S1_at	CV233315	hypothetical protein	-	1e-4	At4g34150	C2 domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.2	95.6	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.6	91.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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