Co-expression analysis

Gene ID PtpAffx.23528.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g05200: ABC1 family protein (HF=6e-106)
Module size 6 genes
NF 0.47
%ile 76.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5078.60.93PtpAffx.23528.1.S1_atCV228036hypothetical protein-6e-106At5g05200ABC1 family proteinO.I.H.G.S.X.
0.7393.60.94Ptp.4058.1.A1_s_atDN484986--5e-7At1g21680-O.I.H.G.S.X.
0.4471.90.96Ptp.2593.1.S1_s_atCK093742hypothetical protein-1e-7At5g60750CAAX amino terminal protease family proteinO.I.H.G.S.X.
0.4067.00.94Ptp.2850.1.S1_atDN493728hypothetical protein-2e-46At1g11720ATSS3 (starch synthase 3)O.I.H.G.S.X.
0.4067.00.94Ptp.2208.1.S1_s_atCK089346hypothetical protein-9e-11At3g47060ftsh7 (FtsH protease 7)O.I.H.G.S.X.
0.3052.00.95PtpAffx.139342.1.S1_atCN520206hypothetical protein-4e-1At3g32090transcription factor-relatedO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.596.1GSM328077Populus x canescens leaf control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.894.9GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.494.0GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.293.5GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.389.8GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328063Populus x canescens leaf control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328070Populus x canescens leaf control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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