Co-expression analysis

Gene ID PtpAffx.23406.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g70960: F-box family protein (HF=7e-1)
Module size 6 genes
NF 0.23
%ile 42.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7794.90.94PtpAffx.23406.1.S1_atCK091295hypothetical protein-7e-1At1g70960F-box family proteinO.I.H.G.S.X.
0.4673.70.94PtpAffx.18236.1.S1_atCV272788hypothetical protein-1e-10At1g09645unknown proteinO.I.H.G.S.X.
0.2340.50.95PtpAffx.450.5.A1_atCV278124hypothetical protein-2e-56At5g50850MAB1 (MACCI-BOU)O.I.H.G.S.X.
0.2136.50.94Ptp.1042.1.A1_atCV266554hypothetical protein-4e-1At1g16170unknown proteinO.I.H.G.S.X.
0.2136.50.94PtpAffx.210790.1.S1_s_atpmrna21170hypothetical protein-4e-27At4g25360-O.I.H.G.S.X.
0.1118.10.94PtpAffx.14532.1.A1_atCK090232hypothetical protein-3e-2At5g64020unknown proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4774.60.92PtpAffx.27652.1.S1_atDN491785hypothetical protein-1e-6At4g20050QRT3 (QUARTET 3)O.I.H.G.S.X.
0.4673.70.91Ptp.6210.1.S1_atCV267239--1e-11At2g38740haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.
0.4673.70.94PtpAffx.223426.1.S1_atpmrna41429mitochondrial phosphate carrier protein-2e-74At5g14040mitochondrial phosphate transporterO.I.H.G.S.X.
0.4471.90.96PtpAffx.103891.1.A1_atCV254829f-box family protein /// hypothetical protein-5e-4At3g61590HWS (HAWAIIAN SKIRT)O.I.H.G.S.X.
0.4471.90.96PtpAffx.54064.1.S1_s_atBI131020hypothetical protein-3e-71At1g14830ADL1C (ARABIDOPSIS DYNAMIN-LIKE PROTEIN 1C)O.I.H.G.S.X.
0.4369.70.92Ptp.911.1.S1_atCK089385hypothetical protein-4e-2At4g19700RINGO.I.H.G.S.X.
0.4369.70.93PtpAffx.206496.1.S1_atpmrna12888hypothetical protein-5e-33At4g02050sugar transporter, putativeO.I.H.G.S.X.
0.3863.70.92PtpAffx.136012.1.A1_s_atCV269634hypothetical protein-3e-1At3g56080dehydration-responsive protein-relatedO.I.H.G.S.X.
0.3661.60.94PtpAffx.11524.3.S1_a_atCV272635hypothetical protein-4e-28At5g23250succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putativeO.I.H.G.S.X.
0.3559.70.92PtpAffx.41983.1.S1_atDN500650hypothetical protein-3e-7At3g06420ATG8H (autophagy 8h)O.I.H.G.S.X.
0.3357.50.93PtpAffx.205339.1.S1_s_atpmrna10570hypothetical protein-2e-104At5g66850MAPKKK5O.I.H.G.S.X.
0.3357.50.93Ptp.6495.1.S1_s_atBU897639hypothetical protein-9e-17At5g13430ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putativeO.I.H.G.S.X.
0.3357.50.93Ptp.5248.1.S1_atCV251116hypothetical protein-5e-45At1g63000NRS/ER (NUCLEOTIDE-RHAMNOSE SYNTHASE/EPIMERASE-REDUCTASE)O.I.H.G.S.X.
0.3357.50.96PtpAffx.213752.1.S1_atpmrna26858glycosyltransferase, CAZy family GT8-5e-18At2g38650GAUT7 (GALACTURONOSYLTRANSFERASE 7)O.I.H.G.S.X.
0.3255.20.92PtpAffx.142714.1.S1_atCX658989hypothetical protein-8e-6At3g11950prenyltransferase/ zinc ion bindingO.I.H.G.S.X.
0.3255.20.90PtpAffx.59020.1.A1_atCV244118hypothetical protein-1e-3At1g62045-O.I.H.G.S.X.
0.3255.20.93Ptp.5989.1.S1_s_atBU814762hypothetical protein-2e-21At1g67600-O.I.H.G.S.X.
0.3153.70.90PtpAffx.13744.2.S1_atBU810149--1e-22At3g13320CAX2 (CATION EXCHANGER 2)O.I.H.G.S.X.
0.2950.50.93PtpAffx.137030.1.S1_s_atBU882587hypothetical protein-3e-27At1g26850dehydration-responsive family proteinO.I.H.G.S.X.
0.2850.50.93PtpAffx.33074.1.S1_atCK091989hypothetical protein-6e-65At5g42000ORMDL family proteinO.I.H.G.S.X.
0.2747.10.90PtpAffx.114321.1.A1_atCV262638hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein /// hypothetical protein-5e-10At5g41040transferase family proteinO.I.H.G.S.X.
0.2747.10.91PtpAffx.89457.1.A1_atDN492169hypothetical protein-5e-22At1g78955CAMS1 (Camelliol C synthase 1)O.I.H.G.S.X.
0.2747.10.93PtpAffx.200762.1.S1_atpmrna1477metal tolerance protein-2e-6At2g29410MTPB1 (METAL TOLERANCE PROTEIN B1)O.I.H.G.S.X.
0.2747.10.87PtpAffx.203932.1.S1_atpmrna7759hypothetical protein-2e-6At5g16170unknown proteinO.I.H.G.S.X.
0.2747.10.89PtpAffx.249.343.A1_atCV273688hypothetical protein-5e-29At5g13430ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putativeO.I.H.G.S.X.
0.2747.10.90PtpAffx.108420.1.A1_atCV241273--2e+0At3g59530strictosidine synthase family proteinO.I.H.G.S.X.
0.2747.10.92PtpAffx.127722.1.A1_atCV238692hypothetical protein-8e-8At1g78790unknown proteinO.I.H.G.S.X.
0.2747.10.93Ptp.6324.1.S1_atCF227446hypothetical protein-1e-1At2g07020protein kinase family proteinO.I.H.G.S.X.
0.2747.10.95PtpAffx.120529.1.A1_s_atCV275657hypothetical protein-2e-7At1g72170unknown proteinO.I.H.G.S.X.
0.2747.10.95PtpAffx.3546.1.A1_atCV241865hypothetical protein-3e-33At5g10730binding / catalytic/ coenzyme bindingO.I.H.G.S.X.
0.2645.20.90PtpAffx.158580.1.S1_atCX659105hypothetical protein-1e-116At2g30970ASP1 (ASPARTATE AMINOTRANSFERASE 1)O.I.H.G.S.X.
0.2543.60.89PtpAffx.24713.1.A1_atCV249144hypothetical protein-1e-53At5g3985040S ribosomal protein S9 (RPS9C)O.I.H.G.S.X.
0.2543.60.90PtpAffx.213040.1.S1_atpmrna25521hypothetical protein-3e-2At1g07430protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.2543.60.93PtpAffx.7814.2.A1_atCV281562hypothetical protein-7e-12At5g47180vesicle-associated membrane family protein / VAMP family proteinO.I.H.G.S.X.
0.2543.60.94Ptp.37.1.S1_atCA929635hypothetical protein-9e-12At4g17890AGD8 (ARF-GAP DOMAIN 8)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.495.9GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.195.5GSM372097Clone3200_LPI5_N-_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
4.095.3GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.992.5GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.289.3GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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