Co-expression analysis

Gene ID PtpAffx.23406.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g70960: F-box family protein (HF=7e-1)
Module size 6 genes
NF 0.23
%ile 42.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7794.90.94PtpAffx.23406.1.S1_atCK091295hypothetical protein-7e-1At1g70960F-box family proteinO.I.H.G.S.X.
0.4673.70.94PtpAffx.18236.1.S1_atCV272788hypothetical protein-1e-10At1g09645unknown proteinO.I.H.G.S.X.
0.2340.50.95PtpAffx.450.5.A1_atCV278124hypothetical protein-2e-56At5g50850MAB1 (MACCI-BOU)O.I.H.G.S.X.
0.2136.50.94Ptp.1042.1.A1_atCV266554hypothetical protein-4e-1At1g16170unknown proteinO.I.H.G.S.X.
0.2136.50.94PtpAffx.210790.1.S1_s_atpmrna21170hypothetical protein-4e-27At4g25360-O.I.H.G.S.X.
0.1118.10.94PtpAffx.14532.1.A1_atCK090232hypothetical protein-3e-2At5g64020unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.495.9GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.195.5GSM372097Clone3200_LPI5_N-_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
4.095.3GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.992.5GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.289.3GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os04g0580500, orthologous to the query gene, PtpAffx.23406.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4458.1Os04g0580500At1g70960-Conserved hypothetical protein9e+0At2g12200ligase, putativeO.I.H.G.S.X.
0.1712.6Os01g0210300At1g70960--2e+0At1g13650-O.I.H.G.S.X.
0.105.7Os04g0586700At1g70960-Zn-finger, RING domain containing protein7e-1At3g50580unknown proteinO.I.H.G.S.X.
0.094.9Os12g0613600At1g70960-Remorin, C-terminal region domain containingprotein5e-2At1g30320remorin family proteinO.I.H.G.S.X.
0.052.5Os06g0181700At1g70960-Pathogenesis-related transcriptional factor andERF domain containing protein1e-13At5g25190ethylene-responsive element-binding protein, putativeO.I.H.G.S.X.
0.021.0Os01g0950700At1g70960-Hypothetical protein6e-5At3g54570calmodulin-binding protein-relatedO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays



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