Co-expression analysis

Gene ID PtpAffx.2333.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g47720: OSB1 (Organellar Single-stranded) (HF=2e+0)
Module size 6 genes
NF 0.69
%ile 95.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5582.20.95PtpAffx.2333.1.S1_atCK091733hypothetical protein-2e+0At1g47720OSB1 (Organellar Single-stranded)O.I.H.G.S.X.
0.8096.00.97PtpAffx.5890.1.S1_atCV230515hypothetical protein-4e-15At5g17770ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)O.I.H.G.S.X.
0.6791.10.97Ptp.1275.2.S1_s_atCV247404type II peroxiredoxin-1e-22At1g65980TPX1 (thioredoxin-dependent peroxidase 1)O.I.H.G.S.X.
0.6791.10.97Ptp.2138.1.S1_atCX183011hypothetical protein-7e-12At1g27350-O.I.H.G.S.X.
0.6187.00.96PtpAffx.25383.2.A1_atCA823290hypothetical protein-2e-15At3g58040SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2)O.I.H.G.S.X.
0.5078.60.96PtpAffx.5384.1.S1_atCV247252--5e-16At5g25450ubiquinol-cytochrome C reductase complex 14 kDa protein, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.596.1GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.289.3GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.188.6GSM327403Populus balsamifera_20071015_Etiolated_seedling_6d_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
1.785.5GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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