Co-expression analysis

Gene ID	PtpAffx.23321.2.S1_a_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g00026: - (HF=2e+0)
Module size	10 genes
NF	0.42
%ile	71.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	82.2	0.95	PtpAffx.23321.2.S1_a_at	DN487149	hypothetical protein	-	2e+0	At4g00026	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.97	PtpAffx.5423.4.S1_at	CV229996	hypothetical protein	-	2e-13	At5g16660	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.97	Ptp.7360.2.A1_a_at	CV256712	hypothetical protein	-	1e-15	At3g04830	binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.97	PtpAffx.50986.1.S1_at	CV235492	hypothetical protein	-	1e-11	At2g22080	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.97	Ptp.2290.1.S1_at	CV278722	hypothetical protein	-	6e-28	At1g09590	60S ribosomal protein L21 (RPL21A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.97	Ptp.2290.1.S1_x_at	CV278722	hypothetical protein	-	6e-28	At1g09590	60S ribosomal protein L21 (RPL21A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	0.97	Ptp.6670.1.S1_s_at	CV274445	hypothetical protein	-	5e-17	At1g77350	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.97	PtpAffx.1447.3.S1_s_at	CV233248	hypothetical protein	-	2e+1	At5g60290	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.97	PtpAffx.94796.1.A1_s_at	CV271192	hypothetical protein	-	3e-1	At2g44290	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.97	PtpAffx.11565.1.A1_at	CV241013	hypothetical protein	-	2e-12	At4g27000	ATRBP45C	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.4	97.0	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.3	93.7	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.0	88.0	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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