Co-expression analysis

Gene ID	PtpAffx.22672.2.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g47790: forkhead-associated domain-containing protein / FHA domain-containing protein (HF=7e-33)
Module size	8 genes
NF	0.08
%ile	17.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	99.5	0.92	PtpAffx.22672.2.S1_at	CX183996	hypothetical protein	-	7e-33	At5g47790	forkhead-associated domain-containing protein / FHA domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.96	PtpAffx.214479.1.S1_at	pmrna28158	ABC transporter family protein	-	1e-16	At1g63270	ATNAP10	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.96	PtpAffx.4020.2.S1_s_at	CX659915	hypothetical protein	-	9e-39	At1g31780	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.95	PtpAffx.97004.1.S1_at	BI125782	hypothetical protein	-	2e-4	At4g35910	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.96	Ptp.4755.1.S1_at	BU895769	hypothetical protein	-	4e-1	At1g14450	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.95	PtpAffx.209161.1.S1_x_at	pmrna18133	hypothetical protein	-	1e-8	At1g14170	KH domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.95	PtpAffx.208562.1.S1_s_at	pmrna16983	hypothetical protein /// serine/threonine protein kinase PBS1	-	2e-40	At5g18610	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.94	PtpAffx.145406.1.S1_at	DN494667	f-box family protein	-	2e+0	At2g24580	sarcosine oxidase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.7	98.6	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.7	97.3	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.1	96.8	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.9	95.1	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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